Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40410 215 / 1e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G01580 123 / 2e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G14730 119 / 4e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 119 / 4e-30 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G08510 118 / 4e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 119 / 5e-30 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37320 118 / 5e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 114 / 2e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 113 / 4e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G34400 112 / 1e-27 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021229 [exp] 479 / 3e-167 AT5G40410 662 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009070 [exp] 119 / 3e-30 AT2G37320 515 / 2e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025277 [exp] 116 / 2e-29 AT2G37320 509 / 3e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 115 / 1e-28 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 114 / 2e-28 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029436 [exp] 114 / 3e-28 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030125 [exp] 112 / 7e-28 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10019098 [exp] 112 / 8e-28 AT3G47840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 112 / 1e-27 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014800 [exp] 281 / 1e-90 AT5G40410 749 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G108000 [exp] 139 / 4e-37 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G082200 [exp] 132 / 5e-35 AT2G37320 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 125 / 4e-32 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G041501 [exp] 117 / 3e-31 AT2G34400 251 / 1e-79 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G103600 [exp] 116 / 4e-29 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G145514 [exp] 114 / 7e-29 AT2G34400 472 / 4e-162 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G001000 [exp] 115 / 9e-29 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G047600 [exp] 115 / 1e-28 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 114 / 2e-28 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10005637 pacid=23157195 polypeptide=Lus10005637 locus=Lus10005637.g ID=Lus10005637.BGIv1.0 annot-version=v1.0 ATGGCGACTTCCCTATTCAGAAATGCTTCAACAGTTCTTCCGCTGAAGCTTTTCACCTCGAGGAGATTCTGCAACAGCATTGCTTCTCAGTCTTGTCTTC AGCTCCGGCCATTTTCCAACTTGGACTCCCTTGTTTCTCTTTTGATTGCTGCTGTAACTTCGTGTGCATCGGTCCCTCACTGCCAAGCGCTTCATTGCAA GGTAATGAAATCCGTGAATTACAGCCATGGGTTCATTGGTGATCAGTTAGTCTCTGCTTATGTAAGATTGGGTTCCATAGGAGACGCACATAACCTGTTC GACGAATTGCCTGACAAAGACTCTGCCTCGTGGAATTCAGTCATGTCTAGCTTCTCTCGCCGTGGGGATCTGGCTAATTGTTTGACTGCCTTCTTCTTCA TGAAACTTGAAACGGATGTTGAACCGAATGATGGCTCTATTGTTCCATTAATTTCCGCCTGCACTGCAACTGGAACTATGGGTATTGGCTCCTATATTCA TGGGTTTGCATTAAAGTTTGGAATGCTTTTGGAGCTGAAAGTTGCTAATGCATTAGTTAACATGTATGGAAAGTCTGGATACTTGGATGCAGCCACTAGA TTGTTCCAGGCAATTCCAGTTCCGAATTTGGTATCCTGGAACTCGGTAATCGCCGTTCATGTTCAAATCGGGTCAGCTGATGAAGGGATCGTTCATTTTA TCCGTTTAAGAAGAGCAGGGATTGAACCTGATCAAGCCACAATTTTAACGGTGGGGGGAGCACATAGCCTGGACTGCCATGATTGCAAGTTATGGCATTC ATGGTATTGGGAAGGAAGCTGTCAAAACTTTTGA
AA sequence Show only first row Show all	>Lus10005637 pacid=23157195 polypeptide=Lus10005637 locus=Lus10005637.g ID=Lus10005637.BGIv1.0 annot-version=v1.0 MATSLFRNASTVLPLKLFTSRRFCNSIASQSCLQLRPFSNLDSLVSLLIAAVTSCASVPHCQALHCKVMKSVNYSHGFIGDQLVSAYVRLGSIGDAHNLF DELPDKDSASWNSVMSSFSRRGDLANCLTAFFFMKLETDVEPNDGSIVPLISACTATGTMGIGSYIHGFALKFGMLLELKVANALVNMYGKSGYLDAATR LFQAIPVPNLVSWNSVIAVHVQIGSADEGIVHFIRLRRAGIEPDQATILTVGGAHSLDCHDCKLWHSWYWEGSCQNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10005637 [exp]	0	1
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10033496 [exp]	5.7	0.8783
AT2G03880		REME1	required for efficiency of mit...		Lus10022974 [exp]	6.3	0.8009
AT1G30680			toprim domain-containing prote...		Lus10038434 [exp]	11.5	0.8482
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10037481 [exp]	13.9	0.8520
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10035619 [exp]	15.2	0.8204
AT5G26180			S-adenosyl-L-methionine-depend...		Lus10026452 [exp]	15.8	0.8426
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031745 [exp]	19.1	0.8365
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10036490 [exp]	19.3	0.8489
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10011563 [exp]	21.4	0.7981
AT2G46050			Pentatricopeptide repeat (PPR-...		Lus10036375 [exp]	23.4	0.8386

Compare expression of checked genes

Lus10005637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.