Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40410 306 / 6e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 251 / 1e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 250 / 2e-78 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 249 / 2e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14850 247 / 1e-77 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 245 / 9e-77 MEF22 mitochondrial editing factor 22 (.1) AT2G01510 242 / 1e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 247 / 2e-76 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 243 / 2e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 245 / 4e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021229 [exp] 495 / 5e-174 AT5G40410 662 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016387 [exp] 266 / 6e-87 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000117 [exp] 253 / 5e-83 AT4G21065 404 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10019735 [exp] 263 / 9e-83 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006073 [exp] 259 / 2e-82 AT1G71420 471 / 1e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006628 [exp] 248 / 6e-81 AT4G21065 399 / 7e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10039388 [exp] 253 / 1e-80 AT5G43790 506 / 8e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009437 [exp] 256 / 3e-80 AT1G71420 753 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010998 [exp] 255 / 3e-80 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014800 [exp] 373 / 4e-127 AT5G40410 749 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G220300 [exp] 257 / 4e-81 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 254 / 8e-81 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 255 / 1e-80 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 255 / 1e-80 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 247 / 1e-78 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G051300 [exp] 248 / 4e-78 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 250 / 8e-78 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 249 / 8e-78 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 250 / 1e-77 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10005638 pacid=23157206 polypeptide=Lus10005638 locus=Lus10005638.g ID=Lus10005638.BGIv1.0 annot-version=v1.0 ATGTCATCATACTATGGAGTTGAGCCGATGATCGATCACTATTCATGCATGGTCGACCTCTTGGGCCGAGCTGGATTTCTGAACGATGCTTACCAGCTCA TTAGAACCATGCCAATGAAGCCAAATTCTGGTGTTTGGGGAGCTCTAATGGGTGCTTGCAGGAAACATGGCAACATTGAGCTTGGGAAGGAAGTGTTTGA CAACTTGTTTGCTTTAGACCCATCAGACTCCAGAAACTACATCTCCTTATCAAATATGTACGCTGCTGCTGGTCTTCTGAACGAAGCTTCCAAGGTGAGG TCACTTATGAAGGAAACAAGTGTGGTCCAGAACCCAGGTTCAAGTTCCATAGAACATGGAAACAAGATTAATGTATTTGTTTCAGGTGATCAATCTCATC CTCTGAGAGAAGAGATATATAACAAGTTGGAAGAAATTATTCGCAAGATCCGGGGAAATGGGATATCGGCAAAGACAGAGCTCGTACTACAGGATATTGA TGATGAGGAGGTGAAAGAGGAGATGATCAACAAACACAGTGAAAAGCTAGCCATTGCATTTGGGCTCCTGGTGAATGGTCAAAATGCAATGCCTCTGGTT ATAACCAAGAACCTGAGGATATGTGGCGACTGTCATAACTTTGCTAAGGTGGTGTCGGGGATGGAGGATCGCGAGATTATTGTCCGAGATACAAAGCGAT TTCACCACTTCGCCAATGGATTATGCTCTTGCAGAGACTACTGGTAA
AA sequence Show only first row Show all	>Lus10005638 pacid=23157206 polypeptide=Lus10005638 locus=Lus10005638.g ID=Lus10005638.BGIv1.0 annot-version=v1.0 MSSYYGVEPMIDHYSCMVDLLGRAGFLNDAYQLIRTMPMKPNSGVWGALMGACRKHGNIELGKEVFDNLFALDPSDSRNYISLSNMYAAAGLLNEASKVR SLMKETSVVQNPGSSSIEHGNKINVFVSGDQSHPLREEIYNKLEEIIRKIRGNGISAKTELVLQDIDDEEVKEEMINKHSEKLAIAFGLLVNGQNAMPLV ITKNLRICGDCHNFAKVVSGMEDREIIVRDTKRFHHFANGLCSCRDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10005638 [exp]	0	1
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10043248 [exp]	8.1	0.7339
AT4G18593			dual specificity protein phosp...		Lus10001888 [exp]	16.6	0.6730
AT4G35380			SEC7-like guanine nucleotide e...		Lus10022975 [exp]	17.1	0.6632
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	17.1	0.6784
AT1G80880			Tetratricopeptide repeat (TPR)...		Lus10041669 [exp]	31.0	0.6579
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	31.9	0.6492
					Lus10042733 [exp]	34.0	0.6183
AT2G34930			disease resistance family prot...		Lus10016337 [exp]	36.4	0.6244
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10018228 [exp]	37.5	0.6277
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	39.2	0.6313

Compare expression of checked genes

Lus10005638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.