Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35750 260 / 6e-89 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT3G10210 178 / 2e-56 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G69340 64 / 5e-12 appr-1-p processing enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021230 [exp] 413 / 2e-149 AT4G35750 265 / 7e-91 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10041841 [exp] 273 / 6e-94 AT4G35750 323 / 7e-114 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10028388 [exp] 264 / 2e-90 AT4G35750 313 / 5e-110 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10035431 [exp] 194 / 2e-62 AT3G10210 353 / 2e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10031044 [exp] 194 / 2e-62 AT3G10210 353 / 3e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10037119 [exp] 65 / 4e-12 AT1G69340 966 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10030413 [exp] 63 / 2e-11 AT1G69340 917 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10036809 [exp] 61 / 8e-11 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014700 [exp] 263 / 3e-90 AT4G35750 296 / 3e-103 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G246800 [exp] 255 / 5e-87 AT4G35750 282 / 9e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G107300 [exp] 230 / 3e-77 AT4G35750 284 / 1e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.006G043166 [exp] 201 / 4e-65 AT3G10210 359 / 6e-127 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.010G161500 [exp] 64 / 5e-12 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.008G093100 [exp] 64 / 6e-12 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005640 pacid=23157225 polypeptide=Lus10005640 locus=Lus10005640.g ID=Lus10005640.BGIv1.0 annot-version=v1.0 ATGGCTGCATCTCTCACTCTGTCCTTCTCCGATCAGATAGATCTCCTGGTTAAGCTCCAGGTCTTCAAGCTCCAAGGCCGCGACAAGCGCGGTAACAAAG TCCTCCGCGTTGTCGGCAAGTACTTCCCCGCTCGGATGGTGAGCTACGATGCGGTAAAGAAGCACTTGGAGGAATCGGTTATCTCGAAATTAGGAGAGAA GCCTTTCTCGGTCATCTACTTTCACGCCGGTGTCCAAAGGGGTGAGAATTTCCCCGGAATCTCTGCCCTCCGGATGCTATACGACGCCGTTCCAGAGGCT TCGAAGAACAATCTGCAAGCCGTTTACTTCGTGCATCCGGGAATTCAGGCCAGGCTCTTCTTCGCCACCGTCGGCCGCTTCATTTTCACTGGCGGGCTGT ACGAGAAGGTGAAGTATGTGAGCAGGCTGGAGTTCGCGTGGGAAGGAGTGAGGAAAGGGGAGATAGAGGTGCCGGAGTTCGTGGTAGAACACGACAAGGA GCTGGAGTATAGGCCGGTGACGACGCTGGATTACGGGATGGAGAGCGATTTCCCGAGGCCGTACAGCGCGGGAGCTAACATGGATAATCCAATGTCTCTC TACTCTATGCGTTGTATTTCCTAA
AA sequence Show only first row Show all	>Lus10005640 pacid=23157225 polypeptide=Lus10005640 locus=Lus10005640.g ID=Lus10005640.BGIv1.0 annot-version=v1.0 MAASLTLSFSDQIDLLVKLQVFKLQGRDKRGNKVLRVVGKYFPARMVSYDAVKKHLEESVISKLGEKPFSVIYFHAGVQRGENFPGISALRMLYDAVPEA SKNNLQAVYFVHPGIQARLFFATVGRFIFTGGLYEKVKYVSRLEFAWEGVRKGEIEVPEFVVEHDKELEYRPVTTLDYGMESDFPRPYSAGANMDNPMSL YSMRCIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35750			SEC14 cytosolic factor family ...		Lus10005640 [exp]	0	1
AT3G50360		CEN1, ATCEN2	CENTRIN 1, centrin2 (.1)		Lus10003320 [exp]	3.6	0.8028
AT3G15358			unknown protein		Lus10015439 [exp]	8.7	0.8222
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10030232 [exp]	13.2	0.8093
AT3G57790			Pectin lyase-like superfamily ...		Lus10026318 [exp]	14.0	0.8020
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10017637 [exp]	14.1	0.7879
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10026634 [exp]	14.1	0.8440
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10019117 [exp]	20.7	0.8342
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	28.3	0.8042
AT4G35750			SEC14 cytosolic factor family ...		Lus10021230 [exp]	31.4	0.7843
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10020344 [exp]	33.3	0.7905

Compare expression of checked genes

Lus10005640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.