Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20370 574 / 0 Pseudouridine synthase family protein (.1) AT1G76120 300 / 8e-96 Pseudouridine synthase family protein (.1.2) AT2G30320 88 / 4e-18 Pseudouridine synthase family protein (.1) AT1G20290 72 / 2e-13 SWI-SNF-related chromatin binding protein (.1) AT5G35400 62 / 4e-10 Pseudouridine synthase family protein (.1.2) AT1G34150 44 / 0.0002 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021231 [exp] 926 / 0 AT1G76120 584 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10026423 [exp] 91 / 7e-19 AT2G30320 459 / 5e-158 Pseudouridine synthase family protein (.1) Lus10042233 [exp] 90 / 1e-18 AT2G30320 447 / 7e-153 Pseudouridine synthase family protein (.1) Lus10022949 [exp] 57 / 2e-08 AT5G35400 489 / 2e-172 Pseudouridine synthase family protein (.1.2) Lus10027594 [exp] 54 / 2e-07 AT5G35400 492 / 1e-173 Pseudouridine synthase family protein (.1.2) Lus10023799 [exp] 47 / 2e-05 AT1G34150 422 / 3e-147 Pseudouridine synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014400 [exp] 664 / 0 AT1G20370 562 / 0.0 Pseudouridine synthase family protein (.1) Potri.005G247000 [exp] 661 / 0 AT1G20370 560 / 0.0 Pseudouridine synthase family protein (.1) Potri.013G154200 [exp] 90 / 8e-19 AT2G30320 486 / 2e-168 Pseudouridine synthase family protein (.1) Potri.018G147400 [exp] 58 / 1e-08 AT5G35400 488 / 8e-172 Pseudouridine synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF01416 [flax] [poplar] PseudoU_synth_1 tRNA pseudouridine synthase
Representative CDS sequence Show only first row Show all	>Lus10005641 pacid=23157235 polypeptide=Lus10005641 locus=Lus10005641.g ID=Lus10005641.BGIv1.0 annot-version=v1.0 ATGTCTACAACCACCACCTCGGACGACGAAGAAACCGCCTTGAACGTCCCAGGTGACGATCCCAACGCCGCCGCCGGAACCAGAAAGCAGAAGTACAAGC GGCGCAAGATCGCCATATTCTTTGCTTATTGCGGAGTGGGCTACCAAGGGATGCAGAAAAACCCTGGCGCTAAAACCATTGAGGGTGACCTTGAAGAAGC CCTGTTTCGCGCCGGCGCCGTACCGGAACAAGACCGCAACTGTCCGAAGCGATATGACTGGGCTCGTTCGGCTCGTACTGATAAGGGCGTGAGCGCCGTC GGTCAGGTCGTATCTGGGAGATTCTACGTGGATCCTCCGGGGTTTGTGGAGCGGTTGAACTCAGAACTTCCGTCGCAATTTCGCATCTTCGGGTACAAGC GAGTGACTGGGTCATTTAGTGCGAAGAAGTTCTGTGACAGGAGAAGGTACGTGTATCTTATCCCTGTGTTCGCTCTTGATCCGTCTTCGCATCGTGATAG GGAGAGTGTACTTGCTAGTTTAGGGTCTGGCTCTGAGCTTGTGAAGTGTTTTGAGTGCTCAGAGAGAGGGAGAAAGGTAGTTGGAGCGGTTGGCAATAAG CGTACTTCTGATCCAGAAGCTGGAGCCTCTCAGTCAGGAATTTCATCTAACACCACCGATGTCAGTGTTGTGGTAGAATCTGTAGTTACTGTTGGAGGTA GTCCAAAGCAACCCTTACTGTCTGCTGAAGCTGTTCCATTGGGAGAAGAAAATGCTAATCCATTGGGAGAAGAAGGTGCTAACCCCAAACCTGAAAATGA GACTTTGGTCGGTGTAGATAATGGGCATGCTGGTGATGTTGGGCTAACAGAAACACTGGACAAAGATGTGAATGCTGTTGACGTGGTTGAACAAGAGAAA GTTGAAGCAGTGGACACGACAGCCAGCTTAGGAGCTCCGTTTTGCTACGGGGAGGAAGAGAAGGAAAGGTTCAATAGAATATTGAGTTACTATGTTGGAA GTCACAACTTCCATAACTTCACAACTAGAACCAAGGCTGAAGACCCTGCAGCTTGGCGATACATCGTGTCGTTCAATGCAAACACCGTAGTTACCGTTGA TGGAATTGATTTTGTTAAGTGTGAGGTTATCGGGCAAAGCTTCATGCTTCACCAGATACGCAAGATGATTGGGGTTGCGGTCGCAATCATGCGGAACTGT GCGCCTGAGTCATTGATAAAAACTGCATTACAAAAGCAGGTTAGATTGACCGTGCCAACAGCTCCTGAGGTTGGGCTATACTTGGATGAGTGCTTTTTCA CATCATATAACCAGAAATGGGAAGCTACACATGAAGAAGTTTCAATGAAGGCATATGAAGAAGAGGCAGATGAGTTCAAAATGAAGTACATATATCCTCA CATTGCGTCCACGGAACACAAGGAAGGAGCTGTGGGCTTGTGGTTGCATTCTCTAAACTATAGAAACTATCCTGATCTCCGTGCTAATGACAACGGAGCC GCAAAACTAGAAGGAGCTGCTGACGCAAACAGTGTTGATCAGAGTGTAGCTACATGTGATCATGTGTTTCTAGGTTTGCTGGAGGGGATGCTTGCAGCCA TGGAAGCAGAATTAAAATCTGTTTCATGGAGCTGGCAATCTGAAACTGCTGCAAGGCTGGTTTTTGGGGTTTCCATTTGTGTTTATTCTTGCCGGGTCCC CTCCTCACAGACGCCCGTGGTTGTTGCAAAAGGTTGTTCCACTGCAACTTTTGATTTGTCTCTTTGA
AA sequence Show only first row Show all	>Lus10005641 pacid=23157235 polypeptide=Lus10005641 locus=Lus10005641.g ID=Lus10005641.BGIv1.0 annot-version=v1.0 MSTTTTSDDEETALNVPGDDPNAAAGTRKQKYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFRAGAVPEQDRNCPKRYDWARSARTDKGVSAV GQVVSGRFYVDPPGFVERLNSELPSQFRIFGYKRVTGSFSAKKFCDRRRYVYLIPVFALDPSSHRDRESVLASLGSGSELVKCFECSERGRKVVGAVGNK RTSDPEAGASQSGISSNTTDVSVVVESVVTVGGSPKQPLLSAEAVPLGEENANPLGEEGANPKPENETLVGVDNGHAGDVGLTETLDKDVNAVDVVEQEK VEAVDTTASLGAPFCYGEEEKERFNRILSYYVGSHNFHNFTTRTKAEDPAAWRYIVSFNANTVVTVDGIDFVKCEVIGQSFMLHQIRKMIGVAVAIMRNC APESLIKTALQKQVRLTVPTAPEVGLYLDECFFTSYNQKWEATHEEVSMKAYEEEADEFKMKYIYPHIASTEHKEGAVGLWLHSLNYRNYPDLRANDNGA AKLEGAADANSVDQSVATCDHVFLGLLEGMLAAMEAELKSVSWSWQSETAARLVFGVSICVYSCRVPSSQTPVVVAKGCSTATFDLSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20370			Pseudouridine synthase family ...		Lus10005641 [exp]	0	1
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10014680 [exp]	1.7	0.8955
AT5G58370			P-loop containing nucleoside t...		Lus10009919 [exp]	3.2	0.8909
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10031551 [exp]	5.5	0.8695
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10021844 [exp]	7.3	0.8395
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016432 [exp]	7.5	0.8630
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010745 [exp]	8.1	0.8638
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10025917 [exp]	9.4	0.8619
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10028007 [exp]	10.7	0.8351
AT1G76120			Pseudouridine synthase family ...		Lus10021231 [exp]	11.4	0.8440
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035991 [exp]	11.7	0.8827

Compare expression of checked genes

Lus10005641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.