Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33680 431 / 2e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 253 / 5e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 252 / 1e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 241 / 5e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 237 / 4e-71 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G74600 237 / 1e-70 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) AT2G29760 228 / 4e-68 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 232 / 5e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 228 / 2e-67 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15300 222 / 2e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021232 [exp] 689 / 0 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 248 / 2e-76 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10022890 [exp] 248 / 4e-75 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 238 / 2e-72 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024936 [exp] 240 / 4e-72 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 237 / 2e-71 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 233 / 2e-68 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002054 [exp] 229 / 1e-67 AT1G74600 930 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10015225 [exp] 227 / 5e-67 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G006800 [exp] 503 / 8e-175 AT2G33680 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 240 / 3e-72 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 237 / 3e-71 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G001200 [exp] 233 / 3e-71 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G244500 [exp] 235 / 4e-71 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 238 / 9e-71 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G108000 [exp] 231 / 8e-70 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.007G104700 [exp] 229 / 8e-69 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 232 / 9e-69 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G151200 [exp] 228 / 4e-68 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10005643 pacid=23157209 polypeptide=Lus10005643 locus=Lus10005643.g ID=Lus10005643.BGIv1.0 annot-version=v1.0 ATGCGCTATGAAGAGACGGATGTGAATGAGTTTGTGTTCACTAGTGTTCTTAGTGCTTTCGTTACTCCAGAATGGCTTAACAGTGCTGGTAATACGGTGC ATTCTCTTGCTGTCAAGAATGAGCTTCTTGCCTTTGTCTCCGTCTTGAATGCAATTGTTACTATGTACGCGAAATGTGGAGACTTGGGGGGTTCTCTTAA AATGTTTGAGCTGTCAAGTGATAAGGATTCCATCACTTGGTCCGCGATGATCACTGGTTTTGCCCAATGTGGGGACTCTCAAAAGGCTTTAAAACTCTTC TCAACGATGCATTTTTCTGGGGTTTATCCGAGTGAATATACTGTTGTTGGGGTTCTTAATTCTTGCAGCGATGTGACTGCTATTGAAGAAGGAAAGCAAG ATGCACGAAAAGGGTTCAATGCTCTCCCAGACCCTGACATCGTTCTATGGACTTCCATGATTGCAGGATATGTGCAAAATGGGGAGAACGAGGATGGTTT GAGCTTATATGGCGAAATGCGGATGAAAGGTGTCTTGCCGAACGAGCTAACCATGGCTAGTCTGTTGAAAGCTTGCTCAAGTTTAGCTGCTTTAGAACAA GGAAAACATATCCATGGCTGTATTGTGAAGTATGGATTCACTTTAGAAATGCCCATCGGCAGTGCTCTTTCAACAATGTATGCCAAACGTGGGTCTCTTG ATGATGCAGGCATTGGTTTTAGGAGGATGTCGGAAAGAGATCTACTGTCATGGAATGCGATGATATCTGGACTTTCCCACAACGGACAAGGTGAGGTAGC TCTGCAGCTCTTCCAAGATATGCGACTCGAGGAAGGTACGAAGCCTGATCACATCACATTCGTGAACATTCTTTCTGCTTGCAGCCACATGGGACTGGTA GACAGAGCGTGGGCATATTTCAACATGATGTTCAACGAATTTGGCATAGCTTCCACGATCGAGCACTATGCCTGCATGGTTGACGCACTGAGCCGGGCAG GGCAGTTGAAAGAAGCCAAGGACTTTATAGATTCAGTCCCAATAGATCATGGTTTGTGTTTGTGGCGCATTCTATTGAGCGCCTGTCGAAACTATCGCAA CTACGAGTTAGGTCAGGTGAGAAGCTAA
AA sequence Show only first row Show all	>Lus10005643 pacid=23157209 polypeptide=Lus10005643 locus=Lus10005643.g ID=Lus10005643.BGIv1.0 annot-version=v1.0 MRYEETDVNEFVFTSVLSAFVTPEWLNSAGNTVHSLAVKNELLAFVSVLNAIVTMYAKCGDLGGSLKMFELSSDKDSITWSAMITGFAQCGDSQKALKLF STMHFSGVYPSEYTVVGVLNSCSDVTAIEEGKQDARKGFNALPDPDIVLWTSMIAGYVQNGENEDGLSLYGEMRMKGVLPNELTMASLLKACSSLAALEQ GKHIHGCIVKYGFTLEMPIGSALSTMYAKRGSLDDAGIGFRRMSERDLLSWNAMISGLSHNGQGEVALQLFQDMRLEEGTKPDHITFVNILSACSHMGLV DRAWAYFNMMFNEFGIASTIEHYACMVDALSRAGQLKEAKDFIDSVPIDHGLCLWRILLSACRNYRNYELGQVRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33680			Tetratricopeptide repeat (TPR)...		Lus10005643 [exp]	0	1
AT2G03880		REME1	required for efficiency of mit...		Lus10005642 [exp]	1.0	0.8817
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10040778 [exp]	2.8	0.7885
					Lus10028150 [exp]	8.2	0.8335
AT4G11720		HAP2, GCS1	GENERATIVE CELL-SPECIFIC 1, ha...		Lus10024496 [exp]	23.0	0.7962
AT3G16000		MFP1	MAR binding filament-like prot...		Lus10025769 [exp]	27.3	0.8103
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Lus10038217 [exp]	28.2	0.7769
AT4G00560			NAD(P)-binding Rossmann-fold s...		Lus10040928 [exp]	30.2	0.8005
AT2G33680			Tetratricopeptide repeat (TPR)...		Lus10021232 [exp]	32.6	0.8049
AT1G72880			Survival protein SurE-like pho...		Lus10015610 [exp]	46.0	0.7278
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10001851 [exp]	47.4	0.7827

Compare expression of checked genes

Lus10005643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.