Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38430 510 / 4e-177 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G02010 437 / 2e-148 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT5G05940 416 / 2e-139 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT3G55660 387 / 1e-128 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT4G00460 360 / 1e-119 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT1G01700 347 / 3e-114 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT3G24620 345 / 6e-113 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT2G45890 339 / 1e-111 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1) AT1G79860 337 / 7e-110 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT4G13240 336 / 1e-109 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021234 [exp] 930 / 0 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10023983 [exp] 487 / 2e-167 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 485 / 1e-166 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10009874 [exp] 438 / 1e-148 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10040248 [exp] 433 / 5e-146 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 428 / 1e-144 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 429 / 3e-143 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10004676 [exp] 425 / 6e-143 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10022601 [exp] 427 / 1e-142 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247100 [exp] 570 / 0 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G014100 [exp] 551 / 0 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 537 / 0 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 537 / 0 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.008G062000 [exp] 445 / 1e-150 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.010G196000 [exp] 439 / 2e-148 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.006G092600 [exp] 439 / 3e-148 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.016G104400 [exp] 434 / 2e-145 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.002G159700 [exp] 382 / 7e-128 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.014G084200 [exp] 374 / 6e-125 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10005644 pacid=23157196 polypeptide=Lus10005644 locus=Lus10005644.g ID=Lus10005644.BGIv1.0 annot-version=v1.0 ATGGGGAGTATTTCGTCTGACGACGATGTTTGTGAGCGGTTTGAGCTCGACAGCTACAGCATGAGTGCCGACATCAGCGAGTCAGAGAGTGGTTCTAGCT GTCTCTCCTCGTCCTGCCGCCATTGCGACCGAAGCAGAGGAGGTTCCACATCACTCACGTCTTCTTCGTCTGCTCAACTCGCTGAAGCGCTGGAATTCGA TGACCGTTACCCTCCGATCACTCTCATGCCGCCTGTTGTCGGCGGCAGACACGTCGTCGTTCAACCGAAGAAGGCCGCGTCTGAATATTCGGAAACTGAA TTGATGAAGGAACGATTTGCCAAGCTTCTTCTAGGAGAGGACATGTCAGGTGGAGGGAATGGGGTTTGCACAGCTCTGGCAATCTCCAATGCCATCACTA ACCTTTCTGCTTCTGTGTTTGGACAGCTGTGGAAGCTGGAGCCGTTACCAGAACAGAAGAAGGCAATGTGGCGGCGTGAGATGGAATGGTTCTTATGTGT AAGTGATTCCATTGTAGAGCTTGTTCCGTCGGTTCAAGCTGTTCCTGGAGGTGGGACTTTCGAAGTTATGGTGCCACAACCGCGGTCGGATCTATTTGTA AACGTGCCAGCTCTGAAGAAGCTCGATGGCATGCTTCTCAACGTTCTTGACGGGTTTTCTGATTCGGAGTTTTGTTATGTTGAGCGCGGAATAGCAGTTT CTAGTGGAGATGGTGAGACCAAAAAATTCATGTCATCCTTGACTTCTGGGACTGAACCATCCTCAATAAGACTGGAGGAGAAATGGTGGCTGCCGTTTCC TAAAGTTCCTGAAAACGGGCTGTGTGAGGATACGAGGAAGAGATTGCAGCAGTGTAGGGAATGCACCAGTCAGATCCTTAAGGCTGCCATGGCTATCAAT AACCATGTCTTAGCCGAGATGGAAATACCGGCTTCTTACTTGGATAGCCTGCCAAAGAATCCGCAAGCTTGTTTGGGGGAGACGATACATGGTTACTTAG CAGCGGACAATTTCTCTCCTGATATCATCCTTGATTACTTGAACTTATCACCAGAGTTCACCACTCTTGAAGTAGCAAACAGGATCGAAGCTGCTGCACA TACATGGAACCAGAAGTATATTAGGAAGTATATGGGTGGTGGTGGCGGTGGAGGGAGATCAACATGGACTGGTAAATCCAAACACGATACTCCGAAATGT AAGATGCTGGCAGCACGGGCAGATAACCTATTACGTAGCTTAAGACTCCGGTTTCCTGACCTTCCTCAGACCTCCTTAGATACCACCAAGATTCAACACA ACAGGGACGTAGGACGTGCAATCATCGAGAGCTACTCAAGGGTAATGGAAAGCTTAGCTTTCAACGTGATGGCAAGAATCGAGGACCTTCTATATGTTGA CGATGCGACAAAGCAACGTGCAGCAGAGGCAGCAGCAGAGTCTCTGTACACACAAGGACGGCTTAGCTGTTCGTTTGCCAAACAAAGGTGGATATCACCT AGCCAGTTTACGTTGGACCATTCCGGGGAGTTGGCCAGATTTCCCAACAACGGAAGGAAGAGTTCAACAGTTTCCAAAGAAGAGCGATGA
AA sequence Show only first row Show all	>Lus10005644 pacid=23157196 polypeptide=Lus10005644 locus=Lus10005644.g ID=Lus10005644.BGIv1.0 annot-version=v1.0 MGSISSDDDVCERFELDSYSMSADISESESGSSCLSSSCRHCDRSRGGSTSLTSSSSAQLAEALEFDDRYPPITLMPPVVGGRHVVVQPKKAASEYSETE LMKERFAKLLLGEDMSGGGNGVCTALAISNAITNLSASVFGQLWKLEPLPEQKKAMWRREMEWFLCVSDSIVELVPSVQAVPGGGTFEVMVPQPRSDLFV NVPALKKLDGMLLNVLDGFSDSEFCYVERGIAVSSGDGETKKFMSSLTSGTEPSSIRLEEKWWLPFPKVPENGLCEDTRKRLQQCRECTSQILKAAMAIN NHVLAEMEIPASYLDSLPKNPQACLGETIHGYLAADNFSPDIILDYLNLSPEFTTLEVANRIEAAAHTWNQKYIRKYMGGGGGGGRSTWTGKSKHDTPKC KMLAARADNLLRSLRLRFPDLPQTSLDTTKIQHNRDVGRAIIESYSRVMESLAFNVMARIEDLLYVDDATKQRAAEAAAESLYTQGRLSCSFAKQRWISP SQFTLDHSGELARFPNNGRKSSTVSKEER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10005644 [exp]	0	1
AT5G11540			D-arabinono-1,4-lactone oxidas...		Lus10038620 [exp]	9.5	0.7380
AT3G51380		IQD20	IQ-domain 20 (.1)		Lus10041844 [exp]	13.4	0.7101
AT3G10330			Cyclin-like family protein (.1...		Lus10035440 [exp]	13.6	0.7235
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10028755 [exp]	17.0	0.6926
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10040834 [exp]	18.5	0.7001
AT4G27270			Quinone reductase family prote...		Lus10020076 [exp]	19.1	0.7268
AT1G63610			unknown protein		Lus10013233 [exp]	19.8	0.6786
AT3G10330			Cyclin-like family protein (.1...		Lus10031055 [exp]	29.1	0.6836
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	31.3	0.7078
					Lus10038207 [exp]	35.9	0.6935

Compare expression of checked genes

Lus10005644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.