Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20410 443 / 3e-152 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021236 [exp] 718 / 0 AT1G20410 519 / 0.0 Pseudouridine synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247500 [exp] 555 / 0 AT1G20410 541 / 0.0 Pseudouridine synthase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005645 pacid=23157203 polypeptide=Lus10005645 locus=Lus10005645.g ID=Lus10005645.BGIv1.0 annot-version=v1.0 ATGTCAGACGGAACACCAACCACCGCAGCGGTGGTGGCGGTAGCCAACGACGTCGCGGGAGGCGATGACAAGGAGGCGCAACTCCTCACAGACGCCATTC GCTCCTTGCCTCCTGAAGCCGTCAAGGACTTGTTGACCTCTGAGGTTTGCATCAGATGCATCCTCAGACTGTTTGGATTCAGAGATCACTTCTACTTTCG CCCATGCATTTCAAAATCTATGGTGCATTCTGTTCTTGGGGAATCTGAACATTTGGACCAGTACGGGATACTTTTTGAATGTAGTGGAGGAAAGGAGAAG ACAACGGATCCTTCGCTCCCGCCTGTCATCTCTGAAAATGATGATGTAGTCTGGTCGTATATGAAGCGGAACTATGGACCAGAGCTTGGTTTTGCAGAAG AGACTTCAAAATGTCTTTCTGCTAAGGATGCCCTAAAACTGGGAATTACTAATCCTCTTGAAAGTATGCTGAACGTTAAACTCAGCTCTACTCCAAGTTC TATCCGTATCCGTCTCACGTACAGTCAAATAAAGTCATCTTGTATGGCTAAGTCTCCAGGAGAAACAAATGAAGCTTGCAAGAGAAGAAAACTGGCTGAT GTGAATGCAGTCCCTGACAGATCTTCTAACTGCTCCGAGTCTTCAGAGCCCTCCAAGTTTCCCTTGGGGAAGGTCGACGAACCCCACTACCTGGCTCTCC ATTGCTACCGAACATCTATCTACTTTGGTGGGAGATACCTCAAGTTCTCAAGAAATGTTAGTCAAACACGTTGGATTATTGATGATGAACGAATGGGAGA ATCCTCAGTCGAGGAAATAATAGGAAGCAATATACTTCCCGCTTGTCAAGGTGACAGTTACAAGTTCCATGCTGCTGGCAGAGAGGATATTGATGTGCGC ATGTTGGGTTCAGGTAGACCCTTCTTGGTTGAAATACAAAATGCACGAAAGATTCCATCGGAGGCTATCATTAAAGAAACAGAAACAAAAATAAACAACA TGGAGAAAAAATTGGTTGCGGTGAGAAATCTTAAACTGGAAGCTAATAACGGTTGGGGTTTAATGCATGAAGGTGAATCGGAAAAACAGAAACAATACTG TTCATTAGTGTGGATCTCACGCCCACTTGAAGATCAAGATGTGCAGTCTATAATTACACTGAAGGATATGAAAATTTCACAAAGGACCCCAATAAGGGTG CTTCATCGGCGAAGTCCTCTAGATCGTGAAAAGATCATACACTGGATGAAAATCGAGAGGGTTGCTGAGAGTTCTCAATACTTTCTGCTGCACTTGTGCA CACAGGCTGGGACATATATCAAGGAATTTGTTCATGGGGATTTTGGCCGCACTAGTCCAAGCATCGGGTCGATTTTGGGATGTAGAGCGGAGATATTGCA GTTGGATGTTACGGACGTGAAAATGGATGGTTTCTGA
AA sequence Show only first row Show all	>Lus10005645 pacid=23157203 polypeptide=Lus10005645 locus=Lus10005645.g ID=Lus10005645.BGIv1.0 annot-version=v1.0 MSDGTPTTAAVVAVANDVAGGDDKEAQLLTDAIRSLPPEAVKDLLTSEVCIRCILRLFGFRDHFYFRPCISKSMVHSVLGESEHLDQYGILFECSGGKEK TTDPSLPPVISENDDVVWSYMKRNYGPELGFAEETSKCLSAKDALKLGITNPLESMLNVKLSSTPSSIRIRLTYSQIKSSCMAKSPGETNEACKRRKLAD VNAVPDRSSNCSESSEPSKFPLGKVDEPHYLALHCYRTSIYFGGRYLKFSRNVSQTRWIIDDERMGESSVEEIIGSNILPACQGDSYKFHAAGREDIDVR MLGSGRPFLVEIQNARKIPSEAIIKETETKINNMEKKLVAVRNLKLEANNGWGLMHEGESEKQKQYCSLVWISRPLEDQDVQSIITLKDMKISQRTPIRV LHRRSPLDREKIIHWMKIERVAESSQYFLLHLCTQAGTYIKEFVHGDFGRTSPSIGSILGCRAEILQLDVTDVKMDGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20410			Pseudouridine synthase family ...		Lus10005645 [exp]	0	1
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10016160 [exp]	3.6	0.7724
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	4.1	0.8254
AT1G20410			Pseudouridine synthase family ...		Lus10021236 [exp]	5.8	0.8044
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	8.8	0.7956
AT1G80170			Pectin lyase-like superfamily ...		Lus10036084 [exp]	9.2	0.7486
AT4G29540		AtLpxA	bacterial transferase hexapept...		Lus10008565 [exp]	11.2	0.7930
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10011940 [exp]	12.5	0.7952
AT5G41980			unknown protein		Lus10024452 [exp]	13.3	0.7753
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	14.5	0.7856
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10024447 [exp]	15.7	0.7837

Compare expression of checked genes

Lus10005645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.