Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15060 57 / 2e-09 unknown protein AT1G80960 56 / 4e-09 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) AT3G03360 53 / 3e-08 F-box/RNI-like superfamily protein (.1) AT1G69630 50 / 3e-07 F-box/RNI-like superfamily protein (.1) AT5G60610 48 / 1e-06 F-box/RNI-like superfamily protein (.1) AT1G49610 48 / 1e-06 F-box family protein (.1) AT1G16930 48 / 2e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G03100 47 / 4e-06 F-box/RNI-like superfamily protein (.1) AT1G78730 47 / 5e-06 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT5G02910 46 / 8e-06 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028722 [exp] 120 / 6e-32 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10018863 [exp] 112 / 2e-30 AT5G44950 62 / 1e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10011268 [exp] 105 / 3e-28 AT5G41630 52 / 7e-08 F-box/RNI-like superfamily protein (.1) Lus10028558 [exp] 75 / 3e-17 AT3G51530 56 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028721 [exp] 72 / 6e-16 AT5G53840 56 / 5e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10003089 [exp] 67 / 2e-13 AT5G53840 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028602 [exp] 62 / 2e-11 AT1G80960 50 / 1e-06 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Lus10005091 [exp] 61 / 9e-11 AT1G69010 149 / 5e-41 BES1-interacting Myc-like protein 2 (.1) Lus10029587 [exp] 41 / 0.0004 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098700 [exp] 51 / 1e-07 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.011G024200 [exp] 43 / 9e-05 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.001G322900 [exp] 42 / 0.0002 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10005646 pacid=23157228 polypeptide=Lus10005646 locus=Lus10005646.g ID=Lus10005646.BGIv1.0 annot-version=v1.0 ATGTATTTGTTTCTCAGAAAACGCAGTGGAGCCATGTTTTCTGCCGCTCTCCTTCGGCGATTCTCTCTCTTCCAGAGAACTATGCCGTCTTCTAACACTA TTGAGTCTACAGAAGAAGAATCAAAGGAAGGAGACTTGGATTGGATTAGTAAGTTGCCTGATGAACTACTTGTGAAAGTGGTGTCTCGTTTGAGCATGAA GGAAGCAATCAGAACTTCAGCAGTCTCGAGAAGGTTGGAAGATTTGTGGAAATTTGCAGACTTGGAATTGGACTTCGATGCTACCGATGAGTTGGTTGTA GATAAGCTAGGAATCAATTTCAGTTTACCTCCTGAACAGAGAAAGCGGTTCCACAATCGGGTGAATGGGGTTGTGATCCAGCTGATGCAGACCCCAAAAC TAGGCAAATTTAGAGTCTTTTACCAGTTGAATAAAGAAGAAGCCTCCAATTCCAAGGAAATGGAGGATATTGACACATGGCTCGACTTCGCCATATTGAA GAGAGTCGAGTCTCTTCATCTATCGTTCAATCTCATCCATCCTGGCCGCATACCTCACTATGTTTTCTCTGAGAAATGCTACAAACACGTCCAGACGTCT CCAGCTAAGCAGCTTAGATCATTATGA
AA sequence Show only first row Show all	>Lus10005646 pacid=23157228 polypeptide=Lus10005646 locus=Lus10005646.g ID=Lus10005646.BGIv1.0 annot-version=v1.0 MYLFLRKRSGAMFSAALLRRFSLFQRTMPSSNTIESTEEESKEGDLDWISKLPDELLVKVVSRLSMKEAIRTSAVSRRLEDLWKFADLELDFDATDELVV DKLGINFSLPPEQRKRFHNRVNGVVIQLMQTPKLGKFRVFYQLNKEEASNSKEMEDIDTWLDFAILKRVESLHLSFNLIHPGRIPHYVFSEKCYKHVQTS PAKQLRSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80960			F-box and Leucine Rich Repeat ...		Lus10005646 [exp]	0	1
AT4G31340			myosin heavy chain-related (.1...		Lus10041099 [exp]	6.5	0.6263
AT4G39810			Polynucleotidyl transferase, r...		Lus10022503 [exp]	15.2	0.6724
AT2G26600			Glycosyl hydrolase superfamily...		Lus10038099 [exp]	28.2	0.6567
AT5G24320			Transducin/WD40 repeat-like su...		Lus10023033 [exp]	29.3	0.6396
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Lus10026745 [exp]	29.3	0.5623
					Lus10040594 [exp]	37.1	0.6091
AT3G63380			ATPase E1-E2 type family prote...		Lus10004086 [exp]	84.3	0.6123
AT5G36930			Disease resistance protein (TI...		Lus10042714 [exp]	159.1	0.5801
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Lus10015536 [exp]	176.3	0.5729
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10020236 [exp]	198.4	0.5564

Compare expression of checked genes

Lus10005646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.