Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021237 [exp] 110 / 1e-30 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005647 pacid=23157234 polypeptide=Lus10005647 locus=Lus10005647.g ID=Lus10005647.BGIv1.0 annot-version=v1.0 ATGCTTCGGTATTTTTCCAGCTATGCTCCTCAGCTGGAGGCCCTTGGCCTGGAAATAGTGCCCCAGTACATGCCGCTGGTTGATGAGGTGGTGGAACACA CTCGCCTTGAGGGGCTAAGAGTGGGAGTTTTGGTTGATGGGAATAGCTATCTTCTTAGATTGATTCCCTTGATCAATGCCTCGTTTCCACACGCTGCAAT TTTGCATTCTTACCCTGGCACATTCGACTTCCGTCTAGCGCATGCCGTCGAAAAGGTCTTGGCGTTTCCCGCAGTTGTGCTTGCCGACGACCACGACATA ACCGCGGGAGATACTCTGGTCAGGGAGAGACCTTCGTGGAATGACACCAAGTTCTCGTTCTATTCAGGCTTACAGGCCGCTGAGGTTTCAAGGCTGAGGG GAAAAAAGTACTAA
AA sequence Show only first row Show all	>Lus10005647 pacid=23157234 polypeptide=Lus10005647 locus=Lus10005647.g ID=Lus10005647.BGIv1.0 annot-version=v1.0 MLRYFSSYAPQLEALGLEIVPQYMPLVDEVVEHTRLEGLRVGVLVDGNSYLLRLIPLINASFPHAAILHSYPGTFDFRLAHAVEKVLAFPAVVLADDHDI TAGDTLVRERPSWNDTKFSFYSGLQAAEVSRLRGKKY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005647 [exp]	0	1
AT1G73440			calmodulin-related (.1)		Lus10009280 [exp]	8.8	0.6751
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10012959 [exp]	11.0	0.7143
AT3G57810			Cysteine proteinases superfami...		Lus10037002 [exp]	16.5	0.7274
AT4G13780			methionine--tRNA ligase, putat...		Lus10010450 [exp]	17.5	0.6963
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10020392 [exp]	26.8	0.7048
AT3G07450			Bifunctional inhibitor/lipid-t...		Lus10030541 [exp]	28.2	0.5866
AT1G60730			NAD(P)-linked oxidoreductase s...		Lus10037408 [exp]	32.0	0.6431
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10025794 [exp]	35.0	0.6633
AT5G59880		ADF3	actin depolymerizing factor 3 ...		Lus10025318 [exp]	36.6	0.6836
AT3G29280			unknown protein		Lus10018197 [exp]	38.7	0.6795

Compare expression of checked genes

Lus10005647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.