Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76150 452 / 3e-161 ECH2, ATECH2 enoyl-CoA hydratase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021238 [exp] 612 / 0 AT1G76160 892 / 0.0 SKU5 similar 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247600 [exp] 507 / 0 AT1G76150 460 / 1e-164 enoyl-CoA hydratase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF01575 [flax] [poplar] MaoC_dehydratas MaoC like domain
Representative CDS sequence Show only first row Show all	>Lus10005648 pacid=23157218 polypeptide=Lus10005648 locus=Lus10005648.g ID=Lus10005648.BGIv1.0 annot-version=v1.0 ATGGCGGACGGATCAGGATTCAGTCATGCCCTTGTTGCTTCTCACAGATTCCCCGAGACGACTTACGATTACACGGAGAGAGACGTTGCTCTTTATGCTC TCGGAATTGGAGCTTGTGGTCGAGATGCCGTCGACGCTGACGAGCTCAAGTATGTTTATCATGAAAACGGTCAAAACTCTATCCAGGTTCTGCCAACATT TTCTACCTTGTTTTCAGTTGGAGTAATGGTGAATGGTTTGGATATTCCGGGTTTAGACTACGATCCGCGGCTTCTCTTGCATGGGCAGCAGTATATAGAG ATGTACAAGCCACTCCCATCGAGTGCATCTCTAATGAACAAGATAAGTCTCGCTGGGCTGCATGACAAAGGCAAAGCGGCTATTGTTGAAGTTGAGACAA AGAGTTACGAGAAGGAATCTGGAGAACTACTATGCATGACCAGATCTACTGCTTATCTGAGGGGAGCTGGTGGGTTCTCGAAGTCATCTCATCCGTATTC GTATTCCACGTATCCAAAAGACCAAGTTGGTGCAGTTAAAATCCCCAAAACTCAACCTTCGGCTGTCTTTGAAGATGTTACTCAACGTTCTCAGGCAAGT AACTTCAAACCTTGTCATAGTACTGTGGGACATGCGTTGCTATATAGGCTGTCAGGGGACTATAATCCTTTGCATTCAGATCCTGCCATTGCTAGTGTTG CAGGATTCCCACGTCCAATATTGCATGGACTGTGCTCCCTCGGATTCGCAGTCAGAGCAGTAATCAAATGCATCGGTAGAGGAGACGTAAACATAGTGAA GAATATCCTAGGCAGATTCCTGTTACATGTTTACCCCGGTGAGACTTTGATCACCGAAATGTGGCTTCAAGGATCAAGGGTCCTGTACCAGACTAAAGTA AAGGAAAGAAACAGGACTGTCCTGGCTGGCTATGTCGATCTTCGTCATATACCTTCGGCCCTGTAA
AA sequence Show only first row Show all	>Lus10005648 pacid=23157218 polypeptide=Lus10005648 locus=Lus10005648.g ID=Lus10005648.BGIv1.0 annot-version=v1.0 MADGSGFSHALVASHRFPETTYDYTERDVALYALGIGACGRDAVDADELKYVYHENGQNSIQVLPTFSTLFSVGVMVNGLDIPGLDYDPRLLLHGQQYIE MYKPLPSSASLMNKISLAGLHDKGKAAIVEVETKSYEKESGELLCMTRSTAYLRGAGGFSKSSHPYSYSTYPKDQVGAVKIPKTQPSAVFEDVTQRSQAS NFKPCHSTVGHALLYRLSGDYNPLHSDPAIASVAGFPRPILHGLCSLGFAVRAVIKCIGRGDVNIVKNILGRFLLHVYPGETLITEMWLQGSRVLYQTKV KERNRTVLAGYVDLRHIPSAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76150		ECH2, ATECH2	enoyl-CoA hydratase 2 (.1)		Lus10005648 [exp]	0	1
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10001598 [exp]	2.0	0.9586
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10038896 [exp]	2.8	0.9606
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10022062 [exp]	3.9	0.9531
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10025837 [exp]	7.3	0.9601
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008754 [exp]	10.2	0.9563
AT4G19160			unknown protein		Lus10038244 [exp]	10.6	0.9529
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	14.1	0.9581
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	15.8	0.9592
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	17.5	0.9581
AT2G14680		MEE13	maternal effect embryo arrest ...		Lus10003821 [exp]	18.9	0.9527

Compare expression of checked genes

Lus10005648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.