Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42250 107 / 3e-29 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22440 102 / 9e-28 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22430 99 / 2e-26 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT4G22110 89 / 1e-22 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G77120 86 / 1e-21 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G24760 76 / 7e-18 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G64710 74 / 5e-17 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G43940 73 / 9e-17 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 62 / 8e-13 GroES-like zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040457 [exp] 108 / 1e-29 AT5G42250 488 / 7e-173 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10023572 [exp] 107 / 5e-29 AT5G42250 439 / 1e-152 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10029759 [exp] 84 / 9e-21 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10004786 [exp] 83 / 2e-20 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10004785 [exp] 83 / 2e-20 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10042787 [exp] 83 / 3e-20 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 82 / 4e-20 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 82 / 4e-20 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029757 [exp] 82 / 6e-20 AT1G77120 602 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013400 [exp] 118 / 1e-33 AT5G42250 521 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Potri.005G060300 [exp] 87 / 4e-22 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 87 / 4e-22 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108601 [exp] 87 / 4e-22 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060000 [exp] 86 / 1e-21 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G072100 [exp] 84 / 8e-21 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 83 / 2e-20 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 83 / 2e-20 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 81 / 8e-20 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.014G193800 [exp] 78 / 1e-18 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10005650 pacid=23157214 polypeptide=Lus10005650 locus=Lus10005650.g ID=Lus10005650.BGIv1.0 annot-version=v1.0 ATGGACTCGCAGGAATCATCAACCGCCGGGAAGCCTATTCGGTGTACAGCGGCGGTTTGTCGCGTAGCTGGAGAGCCGCTGGTGCTGGAAGAGATAACGG TTGCTCCCCCGCGAGCTCACGAAGCTCGAATCCGGATTGTATGTACTTCTCTTTGCCAGAGCGACATCACTTTCTGGAAATTGAAGGATTTCCCCGGAGT TACTCCCAGGATTCTAGGCCATGAGGCGATTGGGTAA
AA sequence Show only first row Show all	>Lus10005650 pacid=23157214 polypeptide=Lus10005650 locus=Lus10005650.g ID=Lus10005650.BGIv1.0 annot-version=v1.0 MDSQESSTAGKPIRCTAAVCRVAGEPLVLEEITVAPPRAHEARIRIVCTSLCQSDITFWKLKDFPGVTPRILGHEAIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10005650 [exp]	0	1
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10005651 [exp]	1.0	0.8827
AT1G52490			unknown protein		Lus10022937 [exp]	2.4	0.7879
AT1G52490			unknown protein		Lus10022939 [exp]	2.8	0.7586
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030440 [exp]	5.9	0.7482
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021199 [exp]	9.2	0.7644
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10038855 [exp]	12.6	0.7240
AT1G09740			Adenine nucleotide alpha hydro...		Lus10009272 [exp]	15.3	0.7573
AT1G60410			F-box family protein (.1)		Lus10020292 [exp]	18.1	0.6977
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10007003 [exp]	23.0	0.6590
AT4G17260			Lactate/malate dehydrogenase f...		Lus10006030 [exp]	28.5	0.6730

Compare expression of checked genes

Lus10005650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.