Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42250 403 / 2e-140 Zinc-binding alcohol dehydrogenase family protein (.1) AT4G22110 338 / 1e-114 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 326 / 4e-110 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22430 320 / 2e-107 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G24760 266 / 4e-87 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT5G43940 263 / 1e-85 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G77120 254 / 6e-82 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT1G32780 251 / 8e-81 GroES-like zinc-binding dehydrogenase family protein (.1) AT1G64710 239 / 2e-76 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G63620 81 / 8e-17 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040457 [exp] 409 / 3e-142 AT5G42250 488 / 7e-173 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10023572 [exp] 352 / 3e-119 AT5G42250 439 / 1e-152 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10004786 [exp] 346 / 8e-118 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000624 [exp] 344 / 4e-117 AT1G22440 514 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10004785 [exp] 342 / 4e-116 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10010506 [exp] 254 / 9e-82 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 252 / 6e-81 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029759 [exp] 250 / 2e-80 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 247 / 4e-79 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013400 [exp] 427 / 1e-149 AT5G42250 521 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Potri.004G067000 [exp] 272 / 5e-89 AT5G24760 616 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Potri.005G060300 [exp] 268 / 1e-87 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 266 / 2e-86 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060000 [exp] 264 / 1e-85 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G254900 [exp] 261 / 7e-85 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.007G108601 [exp] 259 / 9e-84 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 259 / 1e-83 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.011G152900 [exp] 259 / 2e-83 AT1G32780 545 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.007G108500 [exp] 257 / 3e-83 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10005651 pacid=23157219 polypeptide=Lus10005651 locus=Lus10005651.g ID=Lus10005651.BGIv1.0 annot-version=v1.0 ATGAACTCACTGGCCATATGTATTGTTTGTATGCACTTCGCTCATGATTACAAGAAGTTGCTCGACGGCAGAACTTCGATCGTGGAGAGCGTCGGAGATG AAGTAATCGAGTTGAGAGAAGGCGACACGGTGATTCCCGTCTTCCTTCCAGATTGCGCTGAATGTCTGGATTGCAGATCGAAGAAGAGCAATCTCTGCTC AAAGTTCCCGTTCCAGCTCTCTCCATGGATGCCCAGAGACGGCACCAGTCGATTCACCGACCTCGGCGGAAAAACCATCCACCATTTCCTCTCCGTCTCC AGCTTTACCGAGTACACTGTAGTTGACGTCACTCATCTGACTAAGATCGATGCGAACGTCCCCATGAACATGGCTTGTCTCCTCAGTTGCGGAGTCTCCA CCGGAGTGGGTGCTGCTTGGAGGACTGCGGATGTGGAGAAAGGATCGACTGTGGTCATCTTTGGGCTTGGGTCAATTGGGTTGGCGGTTGCTGAGGGAGC ACGGATACGTGGTGCTGGAAGAATTATTGGTGTGGATATGAAGCCAGAAAAGTTTGAAATCGGGAAGAAGTTTGGAATCACAGAGTTTGTCAATCCTGCA GATTATGGAGACATATCCTTGAGCCAGAGTATCTTTACATGTGTTCCTGGTGACGCTAACAGAAGTAAATTGAAGCAGGTGATCAATGAGATGACAGCAG GTGGTGCAGACTATTGCTTTGAGTGTGTGGGTCTGCCATCTGTGATGGAGGAAGCATATGCCTGTTGCCGCAAGGGCTGGGGGAAGACAATTGTCTTGGG AGTTGCCAGACCGTTGTCTGAGATGAAGCTGCAATGCTCCGAAGTCCTTCACTCCGGGAAGACACTTACAGGCTCACTCTTTGGAGGTCTCAAACCGAAA TCGGATATCACAATGCTCCTGAAACATTATATGAACAAGGAGCTTGAGCTAGAGAAATTTGTCACCCATGAATTGGATTTCAAAGACATTAACACGGCCT TTGATCTGCTCATTCAAGGTGAGTCTTTGCGCTGTGTTATGTGGATGGACAGGTAG
AA sequence Show only first row Show all	>Lus10005651 pacid=23157219 polypeptide=Lus10005651 locus=Lus10005651.g ID=Lus10005651.BGIv1.0 annot-version=v1.0 MNSLAICIVCMHFAHDYKKLLDGRTSIVESVGDEVIELREGDTVIPVFLPDCAECLDCRSKKSNLCSKFPFQLSPWMPRDGTSRFTDLGGKTIHHFLSVS SFTEYTVVDVTHLTKIDANVPMNMACLLSCGVSTGVGAAWRTADVEKGSTVVIFGLGSIGLAVAEGARIRGAGRIIGVDMKPEKFEIGKKFGITEFVNPA DYGDISLSQSIFTCVPGDANRSKLKQVINEMTAGGADYCFECVGLPSVMEEAYACCRKGWGKTIVLGVARPLSEMKLQCSEVLHSGKTLTGSLFGGLKPK SDITMLLKHYMNKELELEKFVTHELDFKDINTAFDLLIQGESLRCVMWMDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10005651 [exp]	0	1
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10005650 [exp]	1.0	0.8827
AT5G01740			Nuclear transport factor 2 (NT...		Lus10001261 [exp]	5.2	0.7589
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021199 [exp]	7.1	0.7660
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030440 [exp]	8.5	0.7200
AT1G17615			Disease resistance protein (TI...		Lus10005374 [exp]	10.2	0.6775
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10014041 [exp]	14.7	0.6850
AT4G31980			unknown protein		Lus10038338 [exp]	16.4	0.7005
AT1G52490			unknown protein		Lus10022939 [exp]	17.0	0.6785
AT3G58520			Ubiquitin carboxyl-terminal hy...		Lus10000847 [exp]	17.9	0.6324
AT1G52490			unknown protein		Lus10022937 [exp]	21.4	0.6880

Compare expression of checked genes

Lus10005651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.