Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76180 66 / 2e-13 ERD14 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2) AT1G20450 65 / 1e-12 LTI45, ERD10, LTI29 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2) AT1G20440 61 / 2e-11 AtCOR47, RD17, COR47 cold-regulated 47 (.1) AT3G50980 47 / 5e-07 XERO1 dehydrin xero 1 (.1) AT4G38410 44 / 1e-05 Dehydrin family protein (.1) AT5G66400 43 / 3e-05 ATDI8, RAB18 RESPONSIVE TO ABA 18, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, Dehydrin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021240 [exp] 204 / 7e-67 AT1G76180 81 / 6e-19 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2) Lus10034568 [exp] 85 / 3e-20 AT1G20450 102 / 5e-27 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2) Lus10021827 [exp] 67 / 2e-13 AT1G76180 106 / 1e-28 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2) Lus10041969 [exp] 43 / 4e-05 AT5G66400 66 / 2e-13 RESPONSIVE TO ABA 18, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, Dehydrin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G248100 [exp] 60 / 6e-11 AT1G76180 49 / 4e-07 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2) Potri.002G013200 [exp] 50 / 4e-07 AT1G20440 50 / 1e-06 cold-regulated 47 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00257 [flax] [poplar] Dehydrin Dehydrin
Representative CDS sequence Show only first row Show all	>Lus10005652 pacid=23157230 polypeptide=Lus10005652 locus=Lus10005652.g ID=Lus10005652.BGIv1.0 annot-version=v1.0 ATGGCCGAGGAGTACAAGAGCGTCAATGAGCAGCAGAAGCATGAGGGAGTGGAAGCAACCGACCGTGGGTTGTTCGATTTCCTGGGGAAGAAAGAAGAAG CAAAGCCGGAAGCTGCTGCTGCTACTGCTCCGGCCACTCAAGAGCAACAAGTGATGTCTTCACAGTTTGATGACAAGGTTCATGTCTCTCACCCGCCCAA GGAACCTGAAGAGAAGAAAGCAGCTGGAATCTTTCACCGTTCCAACAGCAGCTCCTCCAGCTCTTCAAGCGAGGAAGAGGTGGAGGAAGGAGGGGAGAAG ATAAGGAGGAAGAAGGAGAAGAAGAAGAAGCTGCCTCTTGGTGCTGCTCATGATCAGCCGGAAGAGAAGAAGGGTTTGATGGACAAGATCAAGGATAAGC TTCCTGGTGGCGAAAAGAAGACTGCCCATGATGAGGAATCTGCCACAGCTGCTGGTCATAATGACGTGGCAACTGCTCACCCGCTGCAGGCTCCAGAGGA GGAGAAGAAGGGGTTGCTGGACAAGATTAAGGAGAAGCTGCCTGGGTATCACCCTAAGGCCGATGAAGCTGCTCACAAGGACAATGAGAAACCATCTTCC TACTAG
AA sequence Show only first row Show all	>Lus10005652 pacid=23157230 polypeptide=Lus10005652 locus=Lus10005652.g ID=Lus10005652.BGIv1.0 annot-version=v1.0 MAEEYKSVNEQQKHEGVEATDRGLFDFLGKKEEAKPEAAAATAPATQEQQVMSSQFDDKVHVSHPPKEPEEKKAAGIFHRSNSSSSSSSSEEEVEEGGEK IRRKKEKKKKLPLGAAHDQPEEKKGLMDKIKDKLPGGEKKTAHDEESATAAGHNDVATAHPLQAPEEEKKGLLDKIKEKLPGYHPKADEAAHKDNEKPSS Y

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10005652 [exp]	0	1
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10026504 [exp]	5.3	0.7454
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023184 [exp]	5.9	0.7998
AT2G37180		PIP2C, PIP2;3, ...	RESPONSIVE TO DESICCATION 28, ...		Lus10026505 [exp]	7.9	0.7322
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039032 [exp]	9.6	0.7387
AT1G30845			unknown protein		Lus10023982 [exp]	11.0	0.7195
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10019934 [exp]	13.0	0.7372
AT5G39570			unknown protein		Lus10029322 [exp]	15.9	0.7229
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Lus10025945 [exp]	26.8	0.7173
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10028264 [exp]	30.1	0.7303
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10031255 [exp]	32.6	0.6647

Compare expression of checked genes

Lus10005652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.