Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22430 148 / 2e-42 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 144 / 5e-41 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G32780 143 / 1e-40 GroES-like zinc-binding dehydrogenase family protein (.1) AT5G24760 134 / 3e-37 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT4G22110 133 / 1e-36 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G42250 127 / 2e-34 Zinc-binding alcohol dehydrogenase family protein (.1) AT5G43940 123 / 4e-33 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G64710 123 / 6e-33 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G77120 120 / 4e-32 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G63620 77 / 4e-16 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009516 [exp] 251 / 7e-86 AT1G22440 97 / 9e-25 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10000624 [exp] 129 / 5e-35 AT1G22440 514 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10004785 [exp] 129 / 5e-35 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10004786 [exp] 128 / 1e-34 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10009517 [exp] 124 / 3e-34 AT1G22440 92 / 2e-21 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10042787 [exp] 124 / 4e-33 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029759 [exp] 123 / 5e-33 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10031890 [exp] 123 / 6e-33 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Lus10010506 [exp] 122 / 1e-32 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G142700 [exp] 190 / 9e-59 AT1G22430 295 / 3e-97 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.018G142750 [exp] 188 / 5e-58 AT1G22430 299 / 4e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.019G041500 [exp] 180 / 8e-55 AT1G22430 308 / 1e-102 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.019G041600 [exp] 179 / 2e-54 AT1G22430 300 / 3e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.011G152900 [exp] 144 / 1e-40 AT1G32780 545 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.011G152800 [exp] 139 / 1e-38 AT1G32780 540 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.002G254900 [exp] 124 / 3e-33 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.004G067000 [exp] 122 / 1e-32 AT5G24760 616 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Potri.007G108401 [exp] 122 / 2e-32 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 121 / 3e-32 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10005656 pacid=23168901 polypeptide=Lus10005656 locus=Lus10005656.g ID=Lus10005656.BGIv1.0 annot-version=v1.0 ATGGCGTCTCTTCCTGTTAGCTTTGCTAAACCCGACAAGAATGGAGTCATCACTTGCAAGGCGATTATGCTGAAGGAGGCGAAGTTGCCAGGAATGTCAT ACGCTGATACCGTCCAGATAATAGACATCCAAGTGGACCCGCCGCAAAATGTCGAGCTTAGGGTTAAGATGTTGTGTGCAAGTGTGTGCCGCACAGATAT TTTAACCATTGAAGGCTTCATGGCCCCGACTCAATTCCCTAAAATCAATGGGCATGAAGGTGTTGGGATAATCGAGAGCATGGGCCCGGACACGAAGAAC TTCAAAGTGGGTGACGTCATCGTGGCTCCAACGTTAGGAGAGTGCCAGACCTGCAGCAGCTGCAGGTCCGGCCGAACCAACTTCTGCCAGAACTACGGGG CCAATGAATCTGCGCTCGAACCGGACGGTACCTCGAGATTCTCGTACATCGATTCGGACGGTAAGAAGAAGCTCCTTTACTACAAGCTGGGATGCTCCAC GTGGACGCAGTACATGGTGGTCGACTCCAACTACGCCACCAAGCTCAACGAGATCGCACCGGAGCTCCCTCCGCCACATGGCAGCATCCTCTCATGTGCT TTTGCCACTGGATACGGTGCTGTATGGCTCGACGCCGCCGTCCAGGAAGGCGACTCCGTCGCCATTTTTGGAGTCGGCTCCGTCGGCATATCTGGTTACT TTGTTTGGGTCGGCACGTGCGTGTTAGCGTCAAATAATTAA
AA sequence Show only first row Show all	>Lus10005656 pacid=23168901 polypeptide=Lus10005656 locus=Lus10005656.g ID=Lus10005656.BGIv1.0 annot-version=v1.0 MASLPVSFAKPDKNGVITCKAIMLKEAKLPGMSYADTVQIIDIQVDPPQNVELRVKMLCASVCRTDILTIEGFMAPTQFPKINGHEGVGIIESMGPDTKN FKVGDVIVAPTLGECQTCSSCRSGRTNFCQNYGANESALEPDGTSRFSYIDSDGKKKLLYYKLGCSTWTQYMVVDSNYATKLNEIAPELPPPHGSILSCA FATGYGAVWLDAAVQEGDSVAIFGVGSVGISGYFVWVGTCVLASNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22430			GroES-like zinc-binding dehydr...		Lus10005656 [exp]	0	1
					Lus10005655 [exp]	1.0	0.9921
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10024511 [exp]	5.7	0.9480
AT5G56350			Pyruvate kinase family protein...		Lus10003439 [exp]	10.6	0.9357
AT5G44390			FAD-binding Berberine family p...		Lus10008410 [exp]	12.0	0.9111
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	12.3	0.9198
AT4G29680			Alkaline-phosphatase-like fami...		Lus10034660 [exp]	13.1	0.9374
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10019463 [exp]	15.3	0.9214
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10022892 [exp]	16.6	0.8926
AT4G35680			Arabidopsis protein of unknown...		Lus10028380 [exp]	18.1	0.8777
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10019183 [exp]	23.2	0.9144

Compare expression of checked genes

Lus10005656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.