Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12650 150 / 2e-44 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024493 [exp] 276 / 7e-94 AT1G12650 228 / 4e-75 unknown protein Lus10017837 [exp] 271 / 4e-92 AT1G12650 224 / 2e-73 unknown protein Lus10020336 [exp] 266 / 9e-90 AT1G12650 216 / 2e-70 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110000 [exp] 213 / 3e-69 AT1G12650 215 / 5e-70 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06102 [flax] [poplar] RRP36 rRNA biogenesis protein RRP36
Representative CDS sequence Show only first row Show all	>Lus10005657 pacid=23168894 polypeptide=Lus10005657 locus=Lus10005657.g ID=Lus10005657.BGIv1.0 annot-version=v1.0 ATGGCGAAACCCAGTAGATACGTTAGCAAATCCCAGTTTCCAGAAAGTGAAGAAGAGGAGCTCGCGTCTTCTTCGTCAGAAGAGGATGATGAGGAGGATG AATTAGAGAGGGAACTTGCCGATGTAACGTTTGAGGAGCTACAGAAAGCAATGTCCAATGGTTCTGATTCGGTTTACAGAAAGCCCAACTTAGAGAAGAA GTCTAAGAGAGCCAACAAGAACAGGCCAGTGCAAGTCACTTGCAAAAAGGCAGTTAGTCGGTCTCGAGAGGTCATTCAAGCTCCCAAGAAGGTGGTACGT GATCCTCGATTCGAGTCCTTGTGCAGTACACTAAATGTGGAGGGGTATAGGAAAAGATACAATTTTCTGTATGAGAATGATCTTCCTGCTGAAAAAGAGG AGTTAAAGAAACAGCTTAAGAAATCGAAAGACCCTGTTGCGATAGATCGATTGAAAGAGCAAATGGCTTGGATTGACAAGCAGCTGAAGTTCGACACGTC GAAACAAGTGGAATCATCGATTCTGAGCGAGCACAAGAAGAAAGAGAGGGAAAGCAGCAAAGCGCGGCAAGCAACCATTTTATCTCAAGAACTGATATCA AGAAACAGTGGCTGGTGGACAAGTATACGAAACTCAAGTGAAAAGCTTGAAATTTTCATTGGGAAGAAGAGAAAGAAGAATGCTGCCAAGGACCACAGGT TTATGCCGTACCGAAGAGCGGCGACAGATGAACAAAGCTGA
AA sequence Show only first row Show all	>Lus10005657 pacid=23168894 polypeptide=Lus10005657 locus=Lus10005657.g ID=Lus10005657.BGIv1.0 annot-version=v1.0 MAKPSRYVSKSQFPESEEEELASSSSEEDDEEDELERELADVTFEELQKAMSNGSDSVYRKPNLEKKSKRANKNRPVQVTCKKAVSRSREVIQAPKKVVR DPRFESLCSTLNVEGYRKRYNFLYENDLPAEKEELKKQLKKSKDPVAIDRLKEQMAWIDKQLKFDTSKQVESSILSEHKKKERESSKARQATILSQELIS RNSGWWTSIRNSSEKLEIFIGKKRKKNAAKDHRFMPYRRAATDEQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12650			unknown protein		Lus10005657 [exp]	0	1
AT1G73090			unknown protein		Lus10035752 [exp]	1.0	0.8652
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Lus10037966 [exp]	4.2	0.8235
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	6.0	0.8250
					Lus10023010 [exp]	8.4	0.8554
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10009827 [exp]	11.0	0.8049
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10000250 [exp]	14.0	0.8207
					Lus10031873 [exp]	17.9	0.8324
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10016748 [exp]	19.7	0.7688
AT2G45530			RING/U-box superfamily protein...		Lus10033252 [exp]	21.4	0.8249
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10024071 [exp]	25.1	0.8068

Compare expression of checked genes

Lus10005657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.