Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42050 679 / 0 vacuolar ATP synthase subunit H family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020335 [exp] 823 / 0 AT3G42050 744 / 0.0 vacuolar ATP synthase subunit H family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G078700 [exp] 733 / 0 AT3G42050 754 / 0.0 vacuolar ATP synthase subunit H family protein (.1) Potri.019G047800 [exp] 712 / 0 AT3G42050 703 / 0.0 vacuolar ATP synthase subunit H family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03224 [flax] [poplar] V-ATPase_H_N V-ATPase subunit H CL0020 [flax] [poplar] TPR PF11698 [flax] [poplar] V-ATPase_H_C V-ATPase subunit H
Representative CDS sequence Show only first row Show all	>Lus10005658 pacid=23168907 polypeptide=Lus10005658 locus=Lus10005658.g ID=Lus10005658.BGIv1.0 annot-version=v1.0 ATGGAGCACGCTGAGCTGACTGCTGATCAGGTTCTGAGGAGGGATATTCCATGGGAGACTTACATGGTGACTAAGCTGATATCAGGGACAGACCTTCAGC TGTTGAGGCGCTATGATAAGAAATCTGAGAGCCACAAAGCACAGTTGCTAGATGATACTGGTGTAGCATATGTTCGGTTGTTTGTTAGCATTCTGCGTGA TATATTCAAAGAAGAAACTGTTGAATATGTCTTGGCTATGATTGATGAAATGCTGACAGCAAATCCCAAAAGAGGCAGATTGTTCCATGACAAGGCTCTT GCAAGTGAGGATACTTATGAGCCCTTCTTAAGATTGCTCTGGAAAGGCAACTGGTTCATACAAGAAATGAGCTGCAAGATTCTAGCTGTGATAGTAAGTG CTAGGCCGAAAAGTTCAGAGAGCTCCCTGTCAAATGGAGAAGCCTCAAATTCCAAGAGCAAAGTCACTGCTATCAATGATGTGCTGAAAGGACTGGTTGA ATGGCTCTGTGCTCAGCTGAAGAAACCTTCGCACCCCACTCGTGCCATCCCAAATGCTATTAGTTGCCTGTCAATGTTACTTAAGGAACCTGTTGTCAGA TCTTCGTTTGTTCAGGCAGATGGAGTGAAACTGCTGATTCCTTTAATTTCTCCAGCATCGACCCAACAATCGATCCAGGTGTTTACTCCTTTAATGTCTC CCGTTCTTCTTTGGATTTGGTTCGCTGGTTTTCCAAAATTTCCTGGTCTAAGCAAAGAGCTCCTCTATGAAACCTGTCTTTGTATCTGGCTGCTATCTTA CTATGAACCTGCAATTGAATACCTGGCTACTTCTAAAACCTTACCACGACTTGTGGATGTCGTGAGGAGTTCAACAAAGGAGAAGGTTGTCCGTGTAGTC GTCCTGACTTTCAGGAACTTGCTCTCCAAAGTCACATTTGGTGCTCAGATGGTAGGCCTTGGACTTCCGCAAGTTGTTCAAAATCTGAAAGCCCAAGCAT GGAGTGATGAGGACCTACTCGACACTCTTGACAAGCTCGAGGAAGGGCTCAAGGAGAACATCAAGAAACTCAGCTCTTTCGACAAGTACAAGCAAGAGGT CCTCCTCGGCCATCTAGACTGGTCTCCCATGCACAAAGACCCCATCTTCTGGCGTGAGAACATCACCACCTTCGAAGAAAACGATTTCCAGATTCTGAGG GTGCTGCTCACGATACTGGAGACATCCAACGACGCAAGAGCCATGGCCGTGGCTTGTTACGACCTCTCCCAGTTCATCCAGTACCACCCTGCCGGTCGGG TCATCGTGACTGACCTCAAGGCGAAAGAGAGGGTGATGAAGCTGATGAACCACGAGAACGGCGAGGTGACCAAGAATGCACTCCTCTGCATCCAGAGGCT CTTCCTGGGAGCCAAGTATGCAAGCTTTTTACAGGTCTAA
AA sequence Show only first row Show all	>Lus10005658 pacid=23168907 polypeptide=Lus10005658 locus=Lus10005658.g ID=Lus10005658.BGIv1.0 annot-version=v1.0 MEHAELTADQVLRRDIPWETYMVTKLISGTDLQLLRRYDKKSESHKAQLLDDTGVAYVRLFVSILRDIFKEETVEYVLAMIDEMLTANPKRGRLFHDKAL ASEDTYEPFLRLLWKGNWFIQEMSCKILAVIVSARPKSSESSLSNGEASNSKSKVTAINDVLKGLVEWLCAQLKKPSHPTRAIPNAISCLSMLLKEPVVR SSFVQADGVKLLIPLISPASTQQSIQVFTPLMSPVLLWIWFAGFPKFPGLSKELLYETCLCIWLLSYYEPAIEYLATSKTLPRLVDVVRSSTKEKVVRVV VLTFRNLLSKVTFGAQMVGLGLPQVVQNLKAQAWSDEDLLDTLDKLEEGLKENIKKLSSFDKYKQEVLLGHLDWSPMHKDPIFWRENITTFEENDFQILR VLLTILETSNDARAMAVACYDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENGEVTKNALLCIQRLFLGAKYASFLQV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G42050			vacuolar ATP synthase subunit ...		Lus10005658 [exp]	0	1
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10000646 [exp]	2.0	0.8865
AT1G79760		DTA4	downstream target of AGL15-4 (...		Lus10025825 [exp]	7.3	0.8058
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10038739 [exp]	7.4	0.8310
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10021094 [exp]	9.8	0.8690
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031365 [exp]	11.7	0.8411
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10017217 [exp]	13.8	0.8179
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	14.3	0.8500
AT2G25800			Protein of unknown function (D...		Lus10008431 [exp]	15.5	0.8254
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10018902 [exp]	15.7	0.8452
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	16.1	0.8067

Compare expression of checked genes

Lus10005658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.