Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 406 / 8e-139 HXXXD-type acyl-transferase family protein (.1) AT3G03480 389 / 4e-132 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 211 / 3e-63 HXXXD-type acyl-transferase family protein (.1.2) AT3G48720 207 / 4e-62 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 206 / 1e-61 HXXXD-type acyl-transferase family protein (.1) AT2G19070 171 / 3e-48 SHT spermidine hydroxycinnamoyl transferase (.1) AT3G62160 170 / 6e-48 HXXXD-type acyl-transferase family protein (.1) AT1G03390 169 / 2e-47 HXXXD-type acyl-transferase family protein (.1) AT1G27620 168 / 5e-47 HXXXD-type acyl-transferase family protein (.1) AT2G25150 167 / 1e-46 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 553 / 0 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 542 / 0 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 514 / 0 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 493 / 1e-172 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 436 / 2e-151 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 365 / 5e-125 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10020333 [exp] 319 / 2e-108 AT5G17540 167 / 2e-49 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 306 / 2e-102 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10001027 [exp] 228 / 2e-71 AT5G17540 210 / 1e-64 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G074500 [exp] 496 / 4e-174 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 486 / 3e-170 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 473 / 5e-165 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 458 / 1e-159 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 451 / 2e-156 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 446 / 1e-154 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 428 / 2e-147 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 420 / 2e-144 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G447300 [exp] 400 / 2e-136 AT5G17540 382 / 2e-129 HXXXD-type acyl-transferase family protein (.1) Potri.001G447500 [exp] 399 / 4e-136 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10005659 pacid=23168910 polypeptide=Lus10005659 locus=Lus10005659.g ID=Lus10005659.BGIv1.0 annot-version=v1.0 ATGGCCGGTCCAACCCAAACCCAACACATCTTCACCGTCCGAAGGAACAAACCCAAACTGGTCCGACCAGCGAAACCGACCCCACACGAGACCAAACCCC TCTCCGACATCGACGACCAGGTGGGGCTCCGGTTCCACATTCCGGTGATTCATTTCTACAAGCACCAACCTTCCATGATCGGGAGGGACCCGGTTTTGAT TATTCGAAAGGCGGTGGCGGAGGCTTTGGTGCATTACTATCCCTTGGCCGGCCGGCTGAGGGAGTTCGGGTCAAAGCTGGCGGTGGACTGCACCGGCGAA GGTGTGTTGTTCATCGAGGCGGATGCTGATGTACGGCTGGCGGATTTCGGGGATGGATTCTTCGAGATGATCCGGCCGCCATTTGCTTGTGTGGATGAGT TGTTGTTTGATGTTCCTGGTTCCTCCGGCGTTCTTGATTCTCCTCTCTTGCTTATTCAGGTCACGCGCCTCCGATGCGGCGGCTTCATATTCGCCCTCCG CCTTCACCACTGCATGAGCGATGCTCCGGGCCTTATCCAATTCCTCTCCACCGTCGCTGAAATCGCCCGTGGAGCCACCACTCCCTCCATCACCCCAGTT TGGGAACGAAGAGTCCTCACGCGCCCCCACAACCAACCACCGCAAGCCACCGCCCCACCACTCGACCACCAAGACATAGCACAACGCTCCTTCTTCTTTG GACCTGCCGAAGTATCGAGCATCCGCCACCACACGCCTCCTCCTCGTCACCAACGGGCCTACTCTCGCTTCGAAATCCTAGCAGCCTGTCTATGGAAGTG TCGAACGTCTGCCCTCCGGCCCAACCCGGAGGAAGAGATGCGGATGGTCTGTGCGGTCAACGTTCGGGGCAAACTCGTCACTAATCCGCCCTTACCGGGC GGATACTACGGGAACGTCCTGGCGTTTCCAGCAGTAGTGGCTCCCGCGGGAGAGCTGTGCAGGAACCCACTCGGGTACGCTCTGGATTTGGTGAGGAAGG CGAAATCATCGCATGATCACATGAATTCGGTTGCTGACATGGCATTGTTCTCGATGACCAAGTGGACGTTCCTTGTATCGGATGTGACTCATGCCGGATT TGGTTCCGTGGATTTCGGGTGGGGCGAGGCCATCTACGCCGGTCCAGCAGAGACGAATGTCGGGCCAATTGAAGGAGTGAGGAATTTTTTCGTGCCGGGG AAGAATAAGAAAGGGGAGGATGGCATTATTCTAGCAATCAGTTTGCCGGCGGAGGCCATGGGACGGTTTGAACAAGAGCTTGAGAGCATGTTTAAAGGAG CTCACTCCGGCGCCGGAGACAATATGAACTACATTAGATCGGCTTTGTAA
AA sequence Show only first row Show all	>Lus10005659 pacid=23168910 polypeptide=Lus10005659 locus=Lus10005659.g ID=Lus10005659.BGIv1.0 annot-version=v1.0 MAGPTQTQHIFTVRRNKPKLVRPAKPTPHETKPLSDIDDQVGLRFHIPVIHFYKHQPSMIGRDPVLIIRKAVAEALVHYYPLAGRLREFGSKLAVDCTGE GVLFIEADADVRLADFGDGFFEMIRPPFACVDELLFDVPGSSGVLDSPLLLIQVTRLRCGGFIFALRLHHCMSDAPGLIQFLSTVAEIARGATTPSITPV WERRVLTRPHNQPPQATAPPLDHQDIAQRSFFFGPAEVSSIRHHTPPPRHQRAYSRFEILAACLWKCRTSALRPNPEEEMRMVCAVNVRGKLVTNPPLPG GYYGNVLAFPAVVAPAGELCRNPLGYALDLVRKAKSSHDHMNSVADMALFSMTKWTFLVSDVTHAGFGSVDFGWGEAIYAGPAETNVGPIEGVRNFFVPG KNKKGEDGIILAISLPAEAMGRFEQELESMFKGAHSGAGDNMNYIRSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005659 [exp]	0	1
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10006009 [exp]	5.3	0.9324
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10006826 [exp]	7.5	0.9174
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	11.1	0.9158
AT2G01690			ARM repeat superfamily protein...		Lus10034578 [exp]	15.0	0.9099
AT2G42790		CSY3	citrate synthase 3 (.1)		Lus10010945 [exp]	15.9	0.8870
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029175 [exp]	16.6	0.9075
AT5G27830			unknown protein		Lus10029881 [exp]	20.1	0.9052
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10013959 [exp]	20.9	0.8499
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10016204 [exp]	23.9	0.9018
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10023392 [exp]	24.5	0.8718

Compare expression of checked genes

Lus10005659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.