Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 447 / 1e-154 HXXXD-type acyl-transferase family protein (.1) AT3G03480 363 / 6e-122 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 244 / 1e-75 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 233 / 1e-71 HXXXD-type acyl-transferase family protein (.1) AT3G48720 218 / 1e-65 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G27620 207 / 2e-61 HXXXD-type acyl-transferase family protein (.1) AT1G03390 189 / 2e-54 HXXXD-type acyl-transferase family protein (.1) AT3G62160 186 / 1e-53 HXXXD-type acyl-transferase family protein (.1) AT5G48930 179 / 4e-51 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G28680 170 / 2e-47 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020332 [exp] 733 / 0 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 607 / 0 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10020331 [exp] 548 / 0 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 513 / 2e-180 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 444 / 3e-154 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 395 / 2e-136 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 341 / 9e-116 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10043189 [exp] 246 / 2e-76 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 245 / 4e-76 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G074500 [exp] 520 / 0 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 515 / 0 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 490 / 2e-171 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 479 / 2e-167 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 455 / 1e-157 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 452 / 1e-156 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 449 / 3e-155 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 439 / 5e-151 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.001G447700 [exp] 424 / 3e-145 AT5G17540 383 / 1e-129 HXXXD-type acyl-transferase family protein (.1) Potri.001G447500 [exp] 423 / 5e-145 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10005660 pacid=23168866 polypeptide=Lus10005660 locus=Lus10005660.g ID=Lus10005660.BGIv1.0 annot-version=v1.0 ATGGGTACAATAATCCAAACCCCATCACCCTCTCTGATTTTCACGGTCCAACGGTCCGAACCGGTGCTGGTCCGACCATCGAAACCGACCCCACACGAGA CAAAGCTCCTCTCGGACATCGACGACCAGGAAGGACTCCGGTTCCACTTCCCGGTCATTCAGTTCTACAAACACAGCCCTGCAATGCAGGGTAAGGACCC GGTGGCCGTTATTCGACGGGCGGTGGCGGAGACACTAGTGTACTATTACCCTTTGGCAGGCCGGCTCAGGGAAGGCCCCAACCGGAAGCTCGTGGTGGAT TGCACCGGCGAAGGCGTGCTGTTCGTCGAGGGTGATGCCGATGTACGGCTGTCGGAGTTCGGCGAAGGGATGATTCAGCCGCCGTTTCCCTGCGTTGATG AGTTGTTGTTTGATGTTCTTGGCTCCTCCGCCGTGCTTCACTCTCCTCTCTTGCTTATTCAGGTCACGCGCCTTCGATGTGGAGGCTTCATACTAGCCCT CCGCATTCCCCACTGCCTGAGCGACGCCGTTGGTCTCATTCAATTCATGTCCGCCGTCGCTGAAATTGCCCGCGGCGCAACTACGACTCCAACCGTCACA CCGGTATGGGAGCGACACATCCTGAGTGCACGCTCCCCTCCGCGAGTGACGTGCAAGCACAACGAGTACACAAAATTACCAACAATTACCGCATCACAAA ACACTAAAGAATGCATGACGTCAACTTCCTTTTCCTTCGGTCCCACCGAAATATCCACCCTCCGCCGGCGCCACGTGCCTACTAGTACACTACGCGCCTC GCGGTTTGAGATCCTTGCCGCCTGCCTGTGGAAGTGTCGGACCGCTGCCCTCGCACTCGACCCGGGCGAAGAGACCCGGATGATCTTAACGGTCAATGTC AGGGGCAAACTCGTAAGTCCGCCCTTGCCAAGGGGATATTACGGGAACGCCTTGGCGTTTCCGATGGCAGTGGCTCCGGCTGGCAAGTTGTGCCGGGAGC CACTCGTGTACGCTTTGGATCTGGTGAGGAAGGCGAAATCAAAGGTGAACGAGGAGTACGTGAAGTCGCTTGTAGACTTGATGGTCTTAGAAGGGCGGCC AAAAGTGTCGATGATGAAGTGGCCGACCTATGTGGTGTCGGATGTGACTTGTGCCGGGTTTAGGGAAGTGAATTTCGGGTGGGGGGAGGCGGTTTACGGC GGCCCGATGGGGGCGGATGTGAAGGGTGTGACAAACTTTTGTCTGTCGGGTAGGAACAAGGGAGGGGAGAATGTGGTTGTTTTGGCGGTTAGTCTGCCGG CGGCGGCGATGAGGAGATTTGTGGAGGAGTTGGAGAAGATGCTATATGAAGAACCTTTTGCAAGTGGTGGCGGCACCATTGTCGACGATCGAATCAAGAA GTTTTCTTATATTTTGTCGGCCTTATGA
AA sequence Show only first row Show all	>Lus10005660 pacid=23168866 polypeptide=Lus10005660 locus=Lus10005660.g ID=Lus10005660.BGIv1.0 annot-version=v1.0 MGTIIQTPSPSLIFTVQRSEPVLVRPSKPTPHETKLLSDIDDQEGLRFHFPVIQFYKHSPAMQGKDPVAVIRRAVAETLVYYYPLAGRLREGPNRKLVVD CTGEGVLFVEGDADVRLSEFGEGMIQPPFPCVDELLFDVLGSSAVLHSPLLLIQVTRLRCGGFILALRIPHCLSDAVGLIQFMSAVAEIARGATTTPTVT PVWERHILSARSPPRVTCKHNEYTKLPTITASQNTKECMTSTSFSFGPTEISTLRRRHVPTSTLRASRFEILAACLWKCRTAALALDPGEETRMILTVNV RGKLVSPPLPRGYYGNALAFPMAVAPAGKLCREPLVYALDLVRKAKSKVNEEYVKSLVDLMVLEGRPKVSMMKWPTYVVSDVTCAGFREVNFGWGEAVYG GPMGADVKGVTNFCLSGRNKGGENVVVLAVSLPAAAMRRFVEELEKMLYEEPFASGGGTIVDDRIKKFSYILSAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005660 [exp]	0	1
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010469 [exp]	1.7	0.9216
					Lus10016118 [exp]	2.4	0.9216
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10004323 [exp]	3.0	0.8850
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10027327 [exp]	4.5	0.8381
AT5G39300		ATHEXPALPHA1.18...	EXPANSIN 25, expansin A25 (.1)		Lus10000305 [exp]	4.5	0.8280
AT4G01580	B3		AP2/B3-like transcriptional fa...		Lus10008460 [exp]	4.6	0.7252
AT1G69930		ATGSTU11	glutathione S-transferase TAU ...		Lus10006525 [exp]	4.8	0.5641
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10012493 [exp]	6.0	0.7111
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10033616 [exp]	6.5	0.7288
AT2G14378			Protein of unknown function (D...		Lus10019428 [exp]	9.9	0.6259

Compare expression of checked genes

Lus10005660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.