Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 362 / 4e-122 HXXXD-type acyl-transferase family protein (.1) AT3G03480 332 / 2e-110 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 208 / 8e-63 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 180 / 4e-52 HXXXD-type acyl-transferase family protein (.1) AT3G48720 171 / 7e-49 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G27620 152 / 9e-42 HXXXD-type acyl-transferase family protein (.1) AT3G62160 151 / 2e-41 HXXXD-type acyl-transferase family protein (.1) AT2G40230 149 / 2e-40 HXXXD-type acyl-transferase family protein (.1) AT1G03390 138 / 3e-36 HXXXD-type acyl-transferase family protein (.1) AT2G25150 133 / 2e-34 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 664 / 0 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 429 / 3e-148 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 389 / 3e-132 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 380 / 3e-129 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 362 / 5e-122 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 323 / 3e-109 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10001027 [exp] 290 / 4e-96 AT5G17540 210 / 1e-64 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 286 / 3e-95 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10043189 [exp] 212 / 4e-64 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043600 [exp] 525 / 0 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 514 / 0 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 468 / 1e-163 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 452 / 5e-158 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 416 / 2e-143 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 410 / 2e-141 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 372 / 8e-126 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 367 / 2e-124 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G127400 [exp] 365 / 3e-123 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.011G153500 [exp] 353 / 1e-118 AT5G17540 388 / 1e-131 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10005661 pacid=23168892 polypeptide=Lus10005661 locus=Lus10005661.g ID=Lus10005661.BGIv1.0 annot-version=v1.0 ATGGCCGGAAAGGATCCAGTCTCGATCATTCGAAATGCTCTTGCCGAGACCCTCGTGCCTTATTACCCGTTCGCTAGCCGCCTCAGGGAAGTTCAGAACA AGAAGCTTGTGGTTGAGTGTACCGGCGAGGGTGTTCTGTTCTTAGAGGCTGACGCCGACGTACGGATGTCGGAATTCGGGGAGTTTTTCCGGCCGCCGTT CCCTTGCTTTGAAGAGTTGCTGTATGATGTCCCTGTGTCTAGCGCCGTCATCCACTCCCCGTTGTTGCTTATTCAGGTCACGCGCCTCCGATGCGGCGGC TTCATCTTTGCCCTCCGCCTCCACCACTGTATGAGCGATGCTCCAGGTCTCGTCCAGTTCATATCAGCCGTCGGTGAGATAGCCCGTGGCGCAACCTCTC CCTCGGTTCCACCGGTGTGGGAGCGCCACGTGCTCAACGCGAGGTCTCCGCCCCGGGTGACATGCACGCACCGCGAGTACGAAGAGGTACCTGAAACGAA GGGAACATTGATCCCACTGGACGACATGGAGCAAATGTCTTTCTTTTTCGGGTGTAAAGAGATAAATGCGCTCCTAGCCCAAGCACCGCCGCACCTCCGC GATAAATGCTCCAAATTCGAGATCCTGACAGCTTGCCTCTGGAAGTGTCGCACTGTTGCGCTGCGACCTGACCCGAACGAGGAGGTGCGGATCATGTGCA TCGTCAATGCGCGTGGAAAATTCGACATGCCGCTTCCAAGGGGTTACTACGGAAACGCATTCGCCTATCCCGCCGCGGTGGCACGTGCGGAGGACCTGCG CAAGAATCCGCTCGGGTACGCGCTGGATCTGGTGAGAAAGGCCAAATCTGACGTGAACGAGGAGTACATGAGGTCGGTGGCGGATCTGATGGTGACGAGT GGGAGGAGGCACTTCACGGTGGTGAGATCTTATGTAGTGTCCGACGTCACCCGAGCCGGGTTTGATGTGGTGGACTTCGGGTGGGGGAAGGCGGCGTACG CAGGTCCAGCAAAGGGTGGCGTCGGTGAGATCCCCGAAGCGGCGAGCTTTTACATTCCGTTTACCAACAAGGAAGGGGAGAAGGGAATTGTGTTGCCGAT CTGTCTGCCACGAGAGGCAATGAAAATCTTTGTGAAGGAGCTGGAAAGGATGTTGAAGGAGGCGCCAGTTGTTGGTACCAAAGAAAACGTTAACAGATCG ACGTTAATGTTATCGGCCTTATGA
AA sequence Show only first row Show all	>Lus10005661 pacid=23168892 polypeptide=Lus10005661 locus=Lus10005661.g ID=Lus10005661.BGIv1.0 annot-version=v1.0 MAGKDPVSIIRNALAETLVPYYPFASRLREVQNKKLVVECTGEGVLFLEADADVRMSEFGEFFRPPFPCFEELLYDVPVSSAVIHSPLLLIQVTRLRCGG FIFALRLHHCMSDAPGLVQFISAVGEIARGATSPSVPPVWERHVLNARSPPRVTCTHREYEEVPETKGTLIPLDDMEQMSFFFGCKEINALLAQAPPHLR DKCSKFEILTACLWKCRTVALRPDPNEEVRIMCIVNARGKFDMPLPRGYYGNAFAYPAAVARAEDLRKNPLGYALDLVRKAKSDVNEEYMRSVADLMVTS GRRHFTVVRSYVVSDVTRAGFDVVDFGWGKAAYAGPAKGGVGEIPEAASFYIPFTNKEGEKGIVLPICLPREAMKIFVKELERMLKEAPVVGTKENVNRS TLMLSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005661 [exp]	0	1
					Lus10008498 [exp]	1.0	1.0000
					Lus10016963 [exp]	1.4	0.9096
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10016228 [exp]	2.4	0.8596
					Lus10016158 [exp]	3.5	0.8335
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10021881 [exp]	3.9	0.7977
AT1G51340			MATE efflux family protein (.1...		Lus10016412 [exp]	11.0	0.7889
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10037866 [exp]	23.7	0.7882
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008212 [exp]	26.5	0.7733
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	28.3	0.7514
					Lus10024141 [exp]	29.8	0.7514

Compare expression of checked genes

Lus10005661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.