Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 93 / 2e-23 HXXXD-type acyl-transferase family protein (.1) AT3G03480 89 / 8e-22 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 40 / 0.0001 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 231 / 2e-75 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 214 / 7e-70 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10001027 [exp] 113 / 2e-31 AT5G17540 210 / 1e-64 HXXXD-type acyl-transferase family protein (.1) Lus10026871 [exp] 113 / 3e-30 AT3G09720 673 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10020334 [exp] 100 / 3e-28 AT3G03480 66 / 8e-14 acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) Lus10005659 [exp] 104 / 2e-27 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 100 / 9e-26 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 92 / 6e-23 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 62 / 4e-12 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043600 [exp] 136 / 2e-39 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 129 / 1e-36 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 119 / 8e-33 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 115 / 2e-31 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 115 / 2e-31 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 112 / 3e-30 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.013G112100 [exp] 89 / 1e-21 AT5G17540 378 / 7e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G127400 [exp] 85 / 3e-20 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 84 / 5e-20 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G127600 [exp] 80 / 1e-18 AT5G17540 406 / 1e-138 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10005662 pacid=23168913 polypeptide=Lus10005662 locus=Lus10005662.g ID=Lus10005662.BGIv1.0 annot-version=v1.0 ATGAGGTCCGTGGCGGATATGATGGCGACGAACGGGAGGAGGCACTTCACCGTGGTGAGATCTTACCTGGTGTCCGACGTCACCCGGGCCGGATTTGATG TGGTGGACTTCGGGTGGGGGAGGGCGGCTTACGCCGGACCGGCGAAGGGTGGCGTCGGCGCAATTCCCGGAGTGGCGAGCTTTTACATTCCCTTTACCAA CAAGGAAGGGGAGAAGGGAATTGTGTTGCCGATCTGTCTGCCGGCGGAGGCAATGAAGATTTTTGTAAAGGAGCTAGAGAGGATGTTGAAGGAGGCGCCG ATCGCCGGTACCGGAGCGAAGGTTAACAGATCCACGTTAATCTTATCGGCCTTGTGA
AA sequence Show only first row Show all	>Lus10005662 pacid=23168913 polypeptide=Lus10005662 locus=Lus10005662.g ID=Lus10005662.BGIv1.0 annot-version=v1.0 MRSVADMMATNGRRHFTVVRSYLVSDVTRAGFDVVDFGWGRAAYAGPAKGGVGAIPGVASFYIPFTNKEGEKGIVLPICLPAEAMKIFVKELERMLKEAP IAGTGAKVNRSTLILSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005662 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005663 [exp]	1.0	0.8970
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	4.2	0.7848
AT4G20040			Pectin lyase-like superfamily ...		Lus10038369 [exp]	20.4	0.7287
AT2G33580			Protein kinase superfamily pro...		Lus10042225 [exp]	25.9	0.7347
AT3G18930			RING/U-box superfamily protein...		Lus10012033 [exp]	35.4	0.7387
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10000748 [exp]	36.5	0.6598
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10016205 [exp]	55.6	0.7210
					Lus10026444 [exp]	63.9	0.6574
AT5G39865			Glutaredoxin family protein (....		Lus10001669 [exp]	70.4	0.7136
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10024191 [exp]	74.8	0.6979

Compare expression of checked genes

Lus10005662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.