Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 291 / 1e-96 HXXXD-type acyl-transferase family protein (.1) AT3G03480 256 / 7e-83 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 153 / 1e-43 HXXXD-type acyl-transferase family protein (.1.2) AT1G27620 143 / 7e-40 HXXXD-type acyl-transferase family protein (.1) AT5G63560 142 / 2e-39 HXXXD-type acyl-transferase family protein (.1) AT3G48720 140 / 8e-39 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G03390 132 / 9e-36 HXXXD-type acyl-transferase family protein (.1) AT3G62160 119 / 4e-31 HXXXD-type acyl-transferase family protein (.1) AT5G48930 119 / 4e-31 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G28680 111 / 6e-28 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 433 / 2e-152 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 362 / 2e-126 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 344 / 3e-117 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 329 / 2e-111 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 325 / 1e-109 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 306 / 3e-103 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 304 / 9e-102 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10001341 [exp] 235 / 6e-79 AT5G17540 205 / 5e-65 HXXXD-type acyl-transferase family protein (.1) Lus10043189 [exp] 159 / 7e-46 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G074500 [exp] 353 / 4e-121 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 348 / 6e-119 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 346 / 3e-118 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 339 / 7e-116 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 297 / 3e-99 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 297 / 3e-99 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 290 / 4e-96 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 279 / 6e-92 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G447500 [exp] 276 / 1e-90 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G447300 [exp] 275 / 2e-90 AT5G17540 382 / 2e-129 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10005663 pacid=23168911 polypeptide=Lus10005663 locus=Lus10005663.g ID=Lus10005663.BGIv1.0 annot-version=v1.0 ATGGCCACATCACTAGTCTTCAACGTCGAGAGAAGCGAACCGGAGCTGGTCCGACCAGCGAAACCGACCCCCTACGAGTTCAAACCACTATCCGACATCG ACGACCAGGAGGGCCTCCGGTTCCACATTCCGGTGATCCAGTTCTACAAGCACCAACCTACCATGGCCGGAAAGGACCCCGTAGCGGTCATTCGCAACGC CCTGGCCGAGACACTAGTGCCTTACTACCCGTTTGCGGGACGACTCAGGGAATCGGGACAGAACAAGAAGCTTGTGGTTGAGTGTACCGGGGAAGGTGTT CTGTTTATTGAGGCTGACGCCGACGTACGGATGGAGGACTTCGGCGAGTTTCTTCAGCCGCCGTTCCCTGGGTTTGAAGAGTTGCTTTTTGATGTCCCTG GGTCTAGCGCCGTGCTCCACTCGCCGTTGTTGCTTATTCAGGTCACGCGTCTCCGATGCGGCGGATTTATCTTCGCTCTCCGTCTCCACCACTGCATGAG CGACGCTCCCGGTCTGGTCCAGTTCATTTCCGCCATTGGCGAGATAGCCCGTGGCGCGAAGTCTCCCTCCGTCCCGCCGGTTTGGGAGCGCCATGTGCTC AATGCGCGGTCACCTCCGCGGGTGACTTGCACGCACCGCGAGTATGAAGCGGTACCAGACACAAAGGGAACAACGACCACCCGCGCGCCAAACACCCCCC GCCGCTCCCCAAGGGATACTACGGCAACGCGTTCGCCTTCCCCGCGGCAGTGGCACGTGCGGACGATTTGTGCAGGAACCCGCTCGGGTACGCGCTGGAT CTGGTGA
AA sequence Show only first row Show all	>Lus10005663 pacid=23168911 polypeptide=Lus10005663 locus=Lus10005663.g ID=Lus10005663.BGIv1.0 annot-version=v1.0 MATSLVFNVERSEPELVRPAKPTPYEFKPLSDIDDQEGLRFHIPVIQFYKHQPTMAGKDPVAVIRNALAETLVPYYPFAGRLRESGQNKKLVVECTGEGV LFIEADADVRMEDFGEFLQPPFPGFEELLFDVPGSSAVLHSPLLLIQVTRLRCGGFIFALRLHHCMSDAPGLVQFISAIGEIARGAKSPSVPPVWERHVL NARSPPRVTCTHREYEAVPDTKGTTTTRAPNTPRRSPRDTTATRSPSPRQWHVRTICAGTRSGTRWIW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005663 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005662 [exp]	1.0	0.8970
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10000748 [exp]	1.7	0.7573
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	2.4	0.8087
AT5G11160		APT5	adenine phosphoribosyltransfer...		Lus10002924 [exp]	6.5	0.6805
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10014750 [exp]	12.5	0.6389
					Lus10026444 [exp]	18.2	0.6780
AT3G55390			Uncharacterised protein family...		Lus10005154 [exp]	19.6	0.6752
AT1G51940			protein kinase family protein ...		Lus10004625 [exp]	29.8	0.6525
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	31.9	0.7336
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10022789 [exp]	37.3	0.6611

Compare expression of checked genes

Lus10005663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.