Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03570 710 / 0 Protein of unknown function (DUF3550/UPF0682) (.1) AT4G40050 491 / 1e-167 Protein of unknown function (DUF3550/UPF0682) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020328 [exp] 1115 / 0 AT3G03570 771 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1) Lus10023156 [exp] 506 / 4e-173 AT4G40050 752 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1) Lus10012756 [exp] 388 / 3e-128 AT4G40050 620 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073200 [exp] 843 / 0 AT3G03570 794 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1) Potri.005G072200 [exp] 511 / 5e-175 AT4G40050 753 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1) Potri.007G096800 [exp] 497 / 1e-169 AT4G40050 750 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12070 [flax] [poplar] SCAI Protein SCAI
Representative CDS sequence Show only first row Show all	>Lus10005664 pacid=23168868 polypeptide=Lus10005664 locus=Lus10005664.g ID=Lus10005664.BGIv1.0 annot-version=v1.0 ATGTCGGAAGCAAATAGCAGTATTCCAGTTAGTGAAGTGTTCTGGTCTCTGGTGGAGAAAGCCGATAAGAAGTTCTCCAAGATCAGAGACTTGCCTTACT ACGAGCGCACCAGGTATGAGTACTTCTTCAAGGTGTTCAAGGTTTACACACAGTTGTGGAAGTTTCAGCAAGAGAATCGGCAGAAGTTAGTGGAGTCTGG ACTGAAGAGATGGGAGATCGGTGAGATTGCATCTCGAATTGCTCAGCTGTACTATGGGCAGTATATGCGGACGAGCGATGCAAGCTACTTGTCCGAATCG TACGTGTTCTACGAAGCAATATTTACTCGGGAGTATTTCAAGGATGGATTGCTTCAGGATCTCAATATTGCAAACAAGCAGTTGAGGTTCCTTGCTAGGT TTCTGATGGTGTGTTTGGTTCTTAACCGGCGGGATGTGGTTCATCAGCTGGTTAATCAGCTCAAAGTTTTGGTTGATGAATGCAGAAGGACATATCAGGA AACTGACTTTAAAGAATGGAAGCTGGTGATTCAGGAAATAATTAGATTTTTGAAAGCTGACACAGCTTTTATGAATATCAGGCCGTTGAGGTACAGCCTT GTGCTGGACCCTAATCCGGATTCTCTACCATGCGCTAAGACCAAGAGACACTTGAGACTACGAGATGTAGTTCTAAGCAGCTACCATCATAATGAGGTCA AGTTTTCCGAGCTTACTCTAGACACGTTCAGGATGCTTCAGTTCTTGGAATGGGAACCAAGTGGTACATTTTACAAGGGAAATGATTCAAAACTTGGCCA AAACGGAGTTCCAGGCCCTAGCCGGGTTAACTATGCCCAGGATATAGTCGATCCTACTTTGCCTCCAAACCCTCGGAAAGTTGTCTTATATCGTCCTTCA ATGACACATTTTTTAGCAGCTCTTGCTACCTGTTCACAGGTTCTTGGTACCCTATGCGAGGAGCTAAATCCCGATGGAGTTCTTCTTGTCTATTTGTCAG CTTCAGGAAGAACCGGAAATACCGTTTCATCGGTTCCAGAATCTCGAGGTTCTATAAGCAGTGCATGGAGTTCAGGAAGGAATTTCCAATCTCAAAGCCC TGACTCAGACACTATCTCTGCTTCTAATTCCTTGAATAGTAGTGCCGATCCACCTGCAAGGAAGAGTAAAAAGGATTGTTTGAACTTCGGCACCCATTCA AATGGAGGGCAAAACAGTGTTTACCCTTCCGACTTGATTCCATTCACAAGGCGGCCTCTCTTTATAGTCATCGACAGCGATGGCAGCGATGCATTCAAGG CAAGTTGTTGTCTCTTAAATGTCATAAATGGAGCCGAAAAAGGAGAGCCTGCAGCAATACTTCTGTCCCCAATTAGTTCGATTCTGAACCCCGCCACTGA TGCTCCCCGTCGTGAAAGTGGTAGCCTGTTCACCATTTTCCTCACTGCTCCAGTGCAGGGCTTCTGCCTATTACTTGGCTTATCCGGTCTTGATACCGAA ATGGAGACATACAACAGGGCCGAGAAGTTGCTATCTTCGTCTCTAAACGACTGGGGTGCCTCTTTGGTGATGTCGGAACCTCTAGACCCTGTTTGGGCAC AGGTGTTGGGCGATCCATTCCTTAGGCGACTCGTCCTAAGATTCTTGTTCTGTCGCGCGGCATTGACACTCTATGGGACAACATTCGGCAAGAAAGAGTT CCACCCGGACTGCTTCCCTTCCCTTCCGCCAACGTTCCTCCCCACTGCCACCGCACCCCAGACTCTAGTCTTGCAGCTGGCCAACATCTTTGGCGCCTCA AAGAAGTTCTTCTTCTCCGACGGTATCATGCTTCCCCCTGAATTCGATCTAGACCTCGAATGA
AA sequence Show only first row Show all	>Lus10005664 pacid=23168868 polypeptide=Lus10005664 locus=Lus10005664.g ID=Lus10005664.BGIv1.0 annot-version=v1.0 MSEANSSIPVSEVFWSLVEKADKKFSKIRDLPYYERTRYEYFFKVFKVYTQLWKFQQENRQKLVESGLKRWEIGEIASRIAQLYYGQYMRTSDASYLSES YVFYEAIFTREYFKDGLLQDLNIANKQLRFLARFLMVCLVLNRRDVVHQLVNQLKVLVDECRRTYQETDFKEWKLVIQEIIRFLKADTAFMNIRPLRYSL VLDPNPDSLPCAKTKRHLRLRDVVLSSYHHNEVKFSELTLDTFRMLQFLEWEPSGTFYKGNDSKLGQNGVPGPSRVNYAQDIVDPTLPPNPRKVVLYRPS MTHFLAALATCSQVLGTLCEELNPDGVLLVYLSASGRTGNTVSSVPESRGSISSAWSSGRNFQSQSPDSDTISASNSLNSSADPPARKSKKDCLNFGTHS NGGQNSVYPSDLIPFTRRPLFIVIDSDGSDAFKASCCLLNVINGAEKGEPAAILLSPISSILNPATDAPRRESGSLFTIFLTAPVQGFCLLLGLSGLDTE METYNRAEKLLSSSLNDWGASLVMSEPLDPVWAQVLGDPFLRRLVLRFLFCRAALTLYGTTFGKKEFHPDCFPSLPPTFLPTATAPQTLVLQLANIFGAS KKFFFSDGIMLPPEFDLDLE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03570			Protein of unknown function (D...		Lus10005664 [exp]	0	1
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10037244 [exp]	2.0	0.9264
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	3.5	0.8998
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10012507 [exp]	3.5	0.9226
AT3G26780		MEF14	mitochondrial editing factor 1...		Lus10031987 [exp]	4.7	0.8934
AT1G24265			Protein of unknown function (D...		Lus10011347 [exp]	5.3	0.9032
AT2G46900			unknown protein		Lus10010275 [exp]	6.0	0.9135
AT2G46900			unknown protein		Lus10036338 [exp]	8.8	0.8600
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10013167 [exp]	8.9	0.8823
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10008130 [exp]	10.4	0.8802
AT1G61690			phosphoinositide binding (.1)		Lus10018391 [exp]	12.2	0.8681

Compare expression of checked genes

Lus10005664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.