Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65180 270 / 2e-84 ENTH/VHS family protein (.1.2) AT3G26990 258 / 2e-79 ENTH/VHS family protein (.1) AT5G10060 249 / 4e-76 ENTH/VHS family protein (.1) AT4G31200 48 / 1e-05 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020327 [exp] 877 / 0 AT3G26990 297 / 4e-94 ENTH/VHS family protein (.1) Lus10035182 [exp] 236 / 8e-71 AT3G26990 469 / 7e-162 ENTH/VHS family protein (.1) Lus10032013 [exp] 209 / 1e-60 AT3G26990 421 / 3e-143 ENTH/VHS family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086700 [exp] 290 / 1e-91 AT5G65180 438 / 9e-151 ENTH/VHS family protein (.1.2) Potri.005G080600 [exp] 270 / 8e-84 AT5G65180 360 / 2e-120 ENTH/VHS family protein (.1.2) Potri.005G080800 [exp] 254 / 2e-77 AT5G65180 357 / 5e-119 ENTH/VHS family protein (.1.2) Potri.001G325700 [exp] 241 / 1e-72 AT3G26990 467 / 8e-161 ENTH/VHS family protein (.1) Potri.018G002000 [exp] 45 / 0.0001 AT4G31200 620 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3) Potri.006G279800 [exp] 45 / 0.0002 AT4G31200 579 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04818 [flax] [poplar] CID CID domain
Representative CDS sequence Show only first row Show all	>Lus10005665 pacid=23168870 polypeptide=Lus10005665 locus=Lus10005665.g ID=Lus10005665.BGIv1.0 annot-version=v1.0 ATGGGCGATGATGTGTTTGATGGACAGGTATTATCTGATAAGTTATCGAAGCTCAACAATTCCCAAGCAAGCATTGAGTCATTGTCACGCTGGTGTGTGA CACACCGGAAGAAAGCGAGGCAGGTTGTTGAGAGCTGGGATCAGTTATTCAAATCATCCCAGAGGGATCAGCGTGTCTCGTTCCTATACTTGGCGAATGA CATCTTACAAAACAGTAGGCGAAAGGGCAGTGAATTTGTTAATGAGTTCTGGAAAGTTCTTCCTAAAGCACTCAAACTCGTCCATGAAAGCGGAGGTGAT AGTGGAAAGAAAACAGTGGCCAGATTGGTTGACATTTGGGAAGAAAGAAAGGTATTTGGTTCTCGTGCTCAAAGTCTGAAAGATGAAATGCTCGGTAAGA TTCCTCCTCCTCCAGCAGTGAGCAATGGAAAGAGCTCAACCCCGAGCGTGAACCCTATTAAGATAGTGAAAAGGGATGCCAACTCATTAAGAATTAAGCT AGCTGTCGGAGGTGCTCCGGAGAAGATACTGACTGCATTTCGATCTGTTCTTGATGAAAATCAAACTGAAGAAGATGCACTCGATAAGAGTAGTGCTGCT GTATCTCATTTGGGTAAAATCAGAGAAGATATAGAAAATACATCCATCGCAGGGAATCAACCCGGTTTAGCATCAGTGGATGAGCTACAAACGCAGGAAA ATGTCCTTCACCAGTGTGTTGGCCAGCTTGAAACTGCTGAAAAATCACGGTCGAATCTAATTTCCCAGCTTAAAGAAGCACTTAAGGAACAAGAATCGAA GCTTGACACCATTCACAGTCAGTTACAAGTTGTGCGAGGCCACATTGAAGAATCTAGCAGTCTGAGGAAGAGGTTAGGATCTGTATCTGGATCAGGGCCA CCATCTACCACCACCACCGCAGCAGCAGATAGCGCGAAGGTTATCGAGCAGATCTCGTCTCCACCATCACAGCCAACAAACACCACTCATCAGCCTGCGG TCTCCTTTGCACCTCTGAAACCCTCAGACGAAGAGAGCAATAAGGCAGCAGCTGCAGCTATGGCAGCTAAGCTCTCTGCCTCCTCTTCATCCGCTCAGAT GCTCTCCTCCGTGCTCTCGTCCCTCGTTGCAGAAGAACTAAACGGCTCCTTGAACTCAGCTGGATTCAGCACAAGCTCGTTGGACTCTCTCCCACCGGAG AAACGGCCTAGATTAGAGAACCCCGGTTCAGCCACCGATGCTGGCAGCTTCTTCTCCCCAGCACAACAACAGCAGCCAGGAACGACGGTAGCGCTTATGC CGTCCATTGCCCCTTCTGGCCAGATGCAATCACCGTTTGGCGTGCTACCGCCGATGCCTCTCCAGCCTCCGATCTGGCAGACTAGCGCACCGGCAAACCA GTACATGCAGCAGCAGCCTGGTATGATGGTCAACATGATCCCGTACGGATACGGAGCAGCTAGCAGCCTCCCTCCTCCACCGCCGCCTCTACCTCCGCAG TTTGCTCTCGGAATGCCAAGGCCTCCTCAGCAATCTCAGCCTCAAGATCCGTCACAAACGCAGCAGCAACAGCAGCAGACAGCAACTACTGGAGGGTACT ATCGGCCACCGGGGATAGGGTTCTACGGGCAAATGCATCAGGCGACTACAGCAACTCATCCAGTACCTAGACAGTGA
AA sequence Show only first row Show all	>Lus10005665 pacid=23168870 polypeptide=Lus10005665 locus=Lus10005665.g ID=Lus10005665.BGIv1.0 annot-version=v1.0 MGDDVFDGQVLSDKLSKLNNSQASIESLSRWCVTHRKKARQVVESWDQLFKSSQRDQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPKALKLVHESGGD SGKKTVARLVDIWEERKVFGSRAQSLKDEMLGKIPPPPAVSNGKSSTPSVNPIKIVKRDANSLRIKLAVGGAPEKILTAFRSVLDENQTEEDALDKSSAA VSHLGKIREDIENTSIAGNQPGLASVDELQTQENVLHQCVGQLETAEKSRSNLISQLKEALKEQESKLDTIHSQLQVVRGHIEESSSLRKRLGSVSGSGP PSTTTTAAADSAKVIEQISSPPSQPTNTTHQPAVSFAPLKPSDEESNKAAAAAMAAKLSASSSSAQMLSSVLSSLVAEELNGSLNSAGFSTSSLDSLPPE KRPRLENPGSATDAGSFFSPAQQQQPGTTVALMPSIAPSGQMQSPFGVLPPMPLQPPIWQTSAPANQYMQQQPGMMVNMIPYGYGAASSLPPPPPPLPPQ FALGMPRPPQQSQPQDPSQTQQQQQQTATTGGYYRPPGIGFYGQMHQATTATHPVPRQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26990			ENTH/VHS family protein (.1)		Lus10005665 [exp]	0	1
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025973 [exp]	1.7	0.8821
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034075 [exp]	2.0	0.8466
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014271 [exp]	4.2	0.8680
AT1G60670			Protein of unknown function (D...		Lus10030566 [exp]	5.9	0.8245
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	7.1	0.8548
AT5G48385			FRIGIDA-like protein (.1)		Lus10002146 [exp]	9.9	0.7960
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	10.2	0.7993
AT1G21610			wound-responsive family protei...		Lus10028676 [exp]	11.8	0.8355
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	13.7	0.8201
AT1G17665			unknown protein		Lus10003829 [exp]	15.9	0.7002

Compare expression of checked genes

Lus10005665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.