Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17670 359 / 2e-124 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020326 [exp] 525 / 0 AT5G17670 374 / 5e-130 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G070700 [exp] 377 / 1e-131 AT5G17670 404 / 2e-142 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07819 [flax] [poplar] PGAP1 PGAP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10005666 pacid=23168897 polypeptide=Lus10005666 locus=Lus10005666.g ID=Lus10005666.BGIv1.0 annot-version=v1.0 ATGCTGCAGCTTGAAACTCCATGGCAACCAAGCCAAACCGATAGATTCCATATTTCAGAACCACCTCTGAAACTCTTCATGGCCGCCATGGCGGCTTCTT TCTCACTCAGAACTCCAATTCCCAGCTACTGTACTTCTTCATCATCATCTTCTTCCCCAGCCGCCATTACCAGCAATCCTCGCCCAGCAGTCATTCTTCC CGGATTGGGGAACAACACGGCGGATTACGGATCGTTGCAGGCGAAGCTTGGGGAGGAGTACGGCGTCTCGACGGTGGTGGCTAAGGTCAACAGAATTGAT TGGCTGAGGAATGCTGCTGGTCTGTTGGATTCCAGTTACTGGAGTGGCACTCTCAAGCCTCGCCCTGTTCTTGATTGGTACCTAGAGAGGGTTGATGAGG CTGTCCAGGAGGCCAAGGAGATTGCACCTGGTGGGAAGCTGTCATTGATCGGACACTCAGCAGGAGGATGGCTGGCTCGAGTCTACATGGAAGAGTTCGG AGTATCGGACATCGCATTGCTGCTAACTCTCGGCACTCCTCACTTGCCACCTCCAAGGGACATTCCAGGGGTGATTGATCAGACCAGAGGCCTCCTTTAC TACGTCGAAGACCACTGCCGAAAAGCAGCCGTAACTCCGGAGCTCAAATACGTCTGTGTTGCAGGCAGATACATTAAGGGGCAAAGATTAGTTGGCAGCA ACACAGAGGAGCAGGTTGGATCGGTAGTTCCGGTGGCCGATGATGTCCTTGCGGCCGACTTGGTGAATGCGCCTGGTCCATCTCCATTTCGTGCTCGCTT CGTTGGGCAGGGCTATAAACAGGTGTGTGGGAGAGCAGATGTTTGGGGTGATGGAGTTGTGCCTGAGGTATCCGCCCATTTGGAAGGTGCTGTGAACATT AGCTTGGATGGTGTTTACCATTCGCCGATTGGCTCCGATGATACCCTACGGCCATGGTATGGCTCGTCCAGTGTCATCGAGCAATGGGTTCACCATCTCC TTCACTAA
AA sequence Show only first row Show all	>Lus10005666 pacid=23168897 polypeptide=Lus10005666 locus=Lus10005666.g ID=Lus10005666.BGIv1.0 annot-version=v1.0 MLQLETPWQPSQTDRFHISEPPLKLFMAAMAASFSLRTPIPSYCTSSSSSSSPAAITSNPRPAVILPGLGNNTADYGSLQAKLGEEYGVSTVVAKVNRID WLRNAAGLLDSSYWSGTLKPRPVLDWYLERVDEAVQEAKEIAPGGKLSLIGHSAGGWLARVYMEEFGVSDIALLLTLGTPHLPPPRDIPGVIDQTRGLLY YVEDHCRKAAVTPELKYVCVAGRYIKGQRLVGSNTEEQVGSVVPVADDVLAADLVNAPGPSPFRARFVGQGYKQVCGRADVWGDGVVPEVSAHLEGAVNI SLDGVYHSPIGSDDTLRPWYGSSSVIEQWVHHLLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10005666 [exp]	0	1
AT3G15110			unknown protein		Lus10009195 [exp]	1.4	0.9375
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10029716 [exp]	3.2	0.9291
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10026089 [exp]	4.2	0.9357
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10017614 [exp]	4.6	0.9261
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10022632 [exp]	5.5	0.9373
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10018747 [exp]	6.3	0.9236
AT1G44000			unknown protein		Lus10029738 [exp]	8.4	0.9025
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	8.5	0.9342
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10012298 [exp]	12.2	0.8873
AT2G20830			transferases;folic acid bindin...		Lus10018558 [exp]	13.9	0.8761

Compare expression of checked genes

Lus10005666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.