Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03590 104 / 2e-29 SWIB/MDM2 domain superfamily protein (.1) AT2G35605 100 / 3e-28 SWIB/MDM2 domain superfamily protein (.1) AT2G14880 97 / 1e-26 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 95 / 6e-26 SWIB/MDM2 domain superfamily protein (.1) AT1G31760 93 / 2e-25 SWIB/MDM2 domain superfamily protein (.1) AT1G49520 70 / 7e-15 SWIB complex BAF60b domain-containing protein (.1) AT4G26810 66 / 7e-15 SWIB/MDM2 domain superfamily protein (.1.2) AT4G22360 67 / 7e-14 SWIB complex BAF60b domain-containing protein (.1) AT3G19080 67 / 7e-14 SWIB complex BAF60b domain-containing protein (.1) AT3G48600 59 / 2e-11 SWIB complex BAF60b domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013893 [exp] 96 / 5e-26 AT2G14880 143 / 7e-45 SWIB/MDM2 domain superfamily protein (.1) Lus10002106 [exp] 88 / 7e-24 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10019640 [exp] 69 / 2e-14 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10033312 [exp] 64 / 6e-14 AT2G35605 68 / 6e-16 SWIB/MDM2 domain superfamily protein (.1) Lus10034774 [exp] 64 / 6e-14 AT2G35605 68 / 6e-16 SWIB/MDM2 domain superfamily protein (.1) Lus10014892 [exp] 66 / 2e-13 AT4G22360 243 / 2e-76 SWIB complex BAF60b domain-containing protein (.1) Lus10016581 [exp] 66 / 2e-13 AT4G22360 190 / 1e-55 SWIB complex BAF60b domain-containing protein (.1) Lus10009333 [exp] 66 / 3e-13 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10038799 [exp] 60 / 2e-11 AT4G26810 160 / 1e-50 SWIB/MDM2 domain superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G070600 [exp] 117 / 1e-34 AT2G35605 108 / 2e-31 SWIB/MDM2 domain superfamily protein (.1) Potri.009G092200 [exp] 103 / 4e-29 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1) Potri.001G297400 [exp] 97 / 9e-27 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.004G145200 [exp] 74 / 2e-16 AT1G49520 308 / 6e-103 SWIB complex BAF60b domain-containing protein (.1) Potri.009G106700 [exp] 74 / 2e-16 AT1G49520 301 / 5e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.006G010700 [exp] 69 / 1e-14 AT4G22360 303 / 2e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.016G013400 [exp] 67 / 5e-14 AT4G22360 301 / 1e-99 SWIB complex BAF60b domain-containing protein (.1) Potri.005G134500 [exp] 66 / 2e-13 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.015G137600 [exp] 59 / 2e-12 AT4G26810 181 / 1e-60 SWIB/MDM2 domain superfamily protein (.1.2) Potri.007G039350 [exp] 51 / 1e-08 AT3G19080 118 / 4e-32 SWIB complex BAF60b domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Lus10005667 pacid=23168904 polypeptide=Lus10005667 locus=Lus10005667.g ID=Lus10005667.BGIv1.0 annot-version=v1.0 ATGTCTTTCGCAGCTAGGGTTTTCCGAACCTCCCGCCCACTTCTGGCCCCGGCCAAGTCTGCCGCCGCAACCACCTCGACCGCCAAGGTCGCAGCGAAGA AACCGAAGCGGGCTTCCCCGAAGCCGAAGTCCGACGCTGCGCCGAAGACAACTAGCGGAATACTGAAGCTGGTCACCGTCTCCCCTGAGCTCGGTAGCTT CCTCGGTGGCGTTCCGGAAGCTTCCAGGACTGACGCCATCAAGAAGATCTGGAGCCACATTAAGGAGCATCAGCTTCAGAACCCGCTGAACAAGAGGGAG ATCATCTGCGATGACAAGCTGAAGACGATCTTCGCTCAGAAAGAGAGAGTTGAAATGCTGGAGATCGCCAAGCTGCTGTCGCCTCATTTCGAGAAGTCTG GTTAA
AA sequence Show only first row Show all	>Lus10005667 pacid=23168904 polypeptide=Lus10005667 locus=Lus10005667.g ID=Lus10005667.BGIv1.0 annot-version=v1.0 MSFAARVFRTSRPLLAPAKSAAATTSTAKVAAKKPKRASPKPKSDAAPKTTSGILKLVTVSPELGSFLGGVPEASRTDAIKKIWSHIKEHQLQNPLNKRE IICDDKLKTIFAQKERVEMLEIAKLLSPHFEKSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03590			SWIB/MDM2 domain superfamily p...		Lus10005667 [exp]	0	1
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10002172 [exp]	1.0	0.9154
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10029989 [exp]	3.5	0.9069
AT3G03920			H/ACA ribonucleoprotein comple...		Lus10020289 [exp]	4.2	0.9023
AT3G13882			Ribosomal protein L34 (.1.2)		Lus10015609 [exp]	5.7	0.8967
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	7.1	0.9089
AT5G52220			unknown protein		Lus10038870 [exp]	7.7	0.8984
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	10.9	0.9102
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10014209 [exp]	13.9	0.8885
AT4G37090			unknown protein		Lus10000742 [exp]	14.1	0.8800
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005893 [exp]	14.7	0.9002

Compare expression of checked genes

Lus10005667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.