Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17690 183 / 3e-53 AtLHP1, LHP1, TFL2 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020324 [exp] 538 / 0 AT5G17690 223 / 3e-68 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1) Lus10013641 [exp] 272 / 6e-88 AT5G17690 253 / 6e-80 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1) Lus10001338 [exp] 258 / 9e-82 AT5G17690 240 / 3e-74 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G070400 [exp] 234 / 9e-73 AT5G17690 259 / 4e-82 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1) Potri.019G044400 [exp] 223 / 1e-67 AT5G17690 268 / 2e-84 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00385 [flax] [poplar] Chromo Chromo (CHRromatin Organisation MOdifier) domain
Representative CDS sequence Show only first row Show all	>Lus10005669 pacid=23168877 polypeptide=Lus10005669 locus=Lus10005669.g ID=Lus10005669.BGIv1.0 annot-version=v1.0 ATGAAGGGGAAGAGGAAAGCATCTGCAAACACCAAGCTGCTGGCCTATAATGGGGTCGACGACGAGCGAGATCCATCTGGCAGTGCGATCGACACTCCAC CGAATAATCGTCAGGAAGAAGATGGAAAAGAAGAAGGAAATCGGGAGAAGGTCGAGCAAGTAGACGATGGAAAAGGTGATGAAGAAGAAGAAGGTGACGA AGACGGAGGAGGAGGAGAAGAAGAAGAAGATGGCGGTGGAGAGGCAGAGGTGGAGGAGGAGCGGCCGAAGCTCGACGAAGGTTTCTATGAAATGGAAGCC ATCCGGCAGAAACGAGTCCGCAAGGGTCAGATTCAGTATCTCATTAAATGGCGGGGATGGCCAGAAACTGCGAATACCTGGGAGCCTAGAGAGAATTTGA TGTCATGTTCTGATGTTATTGAAGCATTTGAGGAGAGGTCGGGATCAGGGAAAGGTTCCCGGAAACGCAAACGCAAGCACGGGGTAGGATCTCATTCGCA GGGCAAGAGGATGAAGCAGCAACGTGGTGGTTCTTCAGAGAATAACGTTACAGGTGATGAAGTAAGTGGCTTGCCTTCCACTTCTTTGAATACCTCAAGC CTTGCAAGTCCTCCTGCGCATATTCAGGAAAATGGCGATGCTAATGGGAACGAATCGTTAGTCCAAGTTGGTGATAATAATGGGTGCACCAGTCGACCAG AAGGCGAACATGATCCGAAGCTTAGTGAGCTGAGAGGAGGATCAGCAACTTCGAATGATCCAAATGCGGATAAGATTGCTGTCCAGATTCCTGATGCTGC AGGTCCCTTGGTTAATTATGTGGACCCTACTGCTCAGAACAGCCGTCGAACTGGTTCTAGGAGAAGGAAGTCGAGTTCTGTGAAGAGATTTAGGGAAGAT CCAGCGGTTTGTGATCCTGCTCCTTTAGATAACCCGTTATCTAACATATCTTTCAGCTGTAGCTCTGGTTACAAAGCTGAAGATTCTCAAGATTCTCCGA TCATCAAGATTCTCAAGCCGATCAGCTTCTCGGCTTCTACATTTGACAGCATTCAGGATGTGCTGGTAACTTTTCTGGCAATGAGGTCCGATGGCAAGGA AGTAATTGTGGATAACAAGTTTTTGAAGACTAATAATCCATTGCTGTTGATCAATTATTACGAGAAGCACCTCAAGTATAGTACTTGA
AA sequence Show only first row Show all	>Lus10005669 pacid=23168877 polypeptide=Lus10005669 locus=Lus10005669.g ID=Lus10005669.BGIv1.0 annot-version=v1.0 MKGKRKASANTKLLAYNGVDDERDPSGSAIDTPPNNRQEEDGKEEGNREKVEQVDDGKGDEEEEGDEDGGGGEEEEDGGGEAEVEEERPKLDEGFYEMEA IRQKRVRKGQIQYLIKWRGWPETANTWEPRENLMSCSDVIEAFEERSGSGKGSRKRKRKHGVGSHSQGKRMKQQRGGSSENNVTGDEVSGLPSTSLNTSS LASPPAHIQENGDANGNESLVQVGDNNGCTSRPEGEHDPKLSELRGGSATSNDPNADKIAVQIPDAAGPLVNYVDPTAQNSRRTGSRRRKSSSVKRFRED PAVCDPAPLDNPLSNISFSCSSGYKAEDSQDSPIIKILKPISFSASTFDSIQDVLVTFLAMRSDGKEVIVDNKFLKTNNPLLLINYYEKHLKYST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10005669 [exp]	0	1
AT5G41770			crooked neck protein, putative...		Lus10034294 [exp]	2.2	0.7966
AT1G30580			GTP binding (.1)		Lus10023261 [exp]	4.9	0.7464
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10019873 [exp]	9.8	0.7549
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10021932 [exp]	9.8	0.7201
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10036783 [exp]	11.5	0.7011
AT4G12680			unknown protein		Lus10016056 [exp]	12.0	0.6676
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Lus10028817 [exp]	13.4	0.6911
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Lus10014546 [exp]	15.2	0.7551
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	15.5	0.7344
AT3G58110			unknown protein		Lus10039903 [exp]	17.3	0.7188

Compare expression of checked genes

Lus10005669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.