Plant FIBer expression Database

Lus10005670 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020323
[exp]
253 / 4e-81 AT3G01320 56 / 5e-08 SIN3-like 1 (.1.2)
Lus10022887
[exp]
150 / 1e-42 AT1G24190 52 / 5e-07 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10005670 pacid=23168872 polypeptide=Lus10005670 locus=Lus10005670.g ID=Lus10005670.BGIv1.0 annot-version=v1.0
ATGGATCTCAACGCAATGCCGTGGGCGCCGTGGGACTCGATGATGGTGGCTGAGTTCCCCGCCGAAAAAGAATACGCCGCAAGATCCCTCATCTCCGAAA
TCCGAAAGGACACCCTACCAGGCCTCGCCTTTAGTCCCATCGAGACGCCTCTCACTGCCGAGATCGTCGACGGCCAGACCGACTTGATCGCCAAGTTCCA
CGCCTTCTTGCCCGGGAAGAAGAAGAAGAAAAACCGGACCAAGTTGCCTCCGCCGCCGGTGGAGGAGATCGGGTTCCCTCGAGTATGTCCAGCTGCCGTC
GACTTCGTGAAGAAGTTACGGAGGCGGGACAAGAAGCTGCAGAGATCTGTATTGGAAGTCTTGGATTCTCGCGGCAGGGGGGAGATTGGCAATGACGAGT
TCGAGAGGGAGATTGTGGAGCTGCTGAAAGGAGATCCCCAATTGCTTCAAGAGTTCGCGGCTTTCTTCCCGGTGACGGACGCAACTCCGATCTCTGTAAA
CCCCTGTTTGATGGAAGAAGGAGCGATTAGGGGTTTGGGGATGGATGAAGAACAGAGAAATCCGAACAGAGCAAAGTCGAGCGATGAGATCCTAACTCCC
AATTGTTTCAAGAATTCGAAACTTTTTCTCCGGCGAGCCCCTTGGAAGAAGGAGAAATTAGGGATTTGGAGGATGAAGAAGAAGAGAGGAATCCAAAGCT
ACGTTTTAAACAAGCTTTTATCAAACCAAATTTTGAGCCGCTCACGAACGGCTTGA
AA sequence
>Lus10005670 pacid=23168872 polypeptide=Lus10005670 locus=Lus10005670.g ID=Lus10005670.BGIv1.0 annot-version=v1.0
MDLNAMPWAPWDSMMVAEFPAEKEYAARSLISEIRKDTLPGLAFSPIETPLTAEIVDGQTDLIAKFHAFLPGKKKKKNRTKLPPPPVEEIGFPRVCPAAV
DFVKKLRRRDKKLQRSVLEVLDSRGRGEIGNDEFEREIVELLKGDPQLLQEFAAFFPVTDATPISVNPCLMEEGAIRGLGMDEEQRNPNRAKSSDEILTP
NCFKNSKLFLRRAPWKKEKLGIWRMKKKRGIQSYVLNKLLSNQILSRSRTA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G24190 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMO... Lus10005670
[exp]
0 1
AT1G72220 RING/U-box superfamily protein... Lus10015901
[exp]
6.2 0.9467
AT5G54800 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHAT... Lus10043060
[exp]
6.6 0.9378
AT1G12260 NAC ANAC007, VND4, ... VASCULAR RELATED NAC-DOMAIN PR... Lus10031142
[exp]
7.5 0.9514
AT2G38060 PHT4;2 phosphate transporter 4;2 (.1) Lus10035532
[exp]
7.7 0.9444
AT4G01070 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYL... Lus10005950
[exp]
8.1 0.9432
AT5G54160 ATOMT1 O-methyltransferase 1 (.1) Lus10032929
[exp]
9.7 0.9507
AT3G11340 UGT76B1 UDP-dependent glycosyltransfer... Lus10035681
[exp]
12.1 0.9316
AT2G37040 PAL1, ATPAL1 PHE ammonia lyase 1 (.1) Lus10040416
[exp]
14.1 0.9383
AT5G54160 ATOMT1 O-methyltransferase 1 (.1) Lus10015576
[exp]
15.7 0.9465
AT3G43190 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE S... Lus10012454
[exp]
16.2 0.9223

Lus10005670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.