Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17900 422 / 1e-145 microfibrillar-associated protein-related (.1) AT4G08580 327 / 2e-108 microfibrillar-associated protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020319 [exp] 587 / 0 AT4G08580 511 / 1e-180 microfibrillar-associated protein-related (.1) Lus10020321 [exp] 373 / 3e-128 AT4G08580 390 / 2e-135 microfibrillar-associated protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065600 [exp] 478 / 1e-167 AT5G17900 392 / 9e-134 microfibrillar-associated protein-related (.1) Potri.019G039900 [exp] 342 / 2e-114 AT5G17900 356 / 6e-120 microfibrillar-associated protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06991 [flax] [poplar] MFAP1 Microfibril-associated/Pre-mRNA processing
Representative CDS sequence Show only first row Show all	>Lus10005672 pacid=23168878 polypeptide=Lus10005672 locus=Lus10005672.g ID=Lus10005672.BGIv1.0 annot-version=v1.0 ATGTCGGTCACGGCGGGTGTCAGCGACGCCGCGCTGGCGATCCGAGAGAAGCTGAAAGGCAAAATCGGGCAGACGAAGGTGACGAGGTATTGGCCGGGGA AAGCTCCTGAGTGGGCTGAAGAAGGAGATGAAGATGGCGATATCAGGACGTCTAGGCTGGACAATCTGGAGAGAGCTTTTCCTACTCACGAAGGCGGTTC TACTGATCTCTCCGGGAGGGATGATCCCAGACTGCGTCGTTTGGCTGTGAGCAGGGATGATAACCGAGATGAAGCTAGGGCAGATCATCGTCGGATTCGG CAGGCGGAGATTGTTTCGACGGAGGAAGAGGAGAGGCTCCAGGAAGGTTTGGATGCAGAGGAGGAAGATGAGGAAGAGAGGAGGAGGAGAATCAAGGAGA AGATGAGGCGGCAGAGGGAGCAAGAGGAAGCTATGTTGCTCCCTGTGGAAGAAGAAGAAGAGGAGGAAGAAGAAGACGAAGAAGAGTCTGAGTATGAGAC CGATTCAGAAGAGGAGACGACTGGGATGGCAATGTTGAAGCCGGTTTTCGTTCCGAAATCGGAGAGAGATACGATAGCTGAGCGTGAGAGGCTCGAGGAA GAGGAAAGGGCGTTAGAAGAGAAAGTGAAGAAGAAGGTTGAAGAGAGGAAACTGGAGACGAAGCAGATATTGCTTGAAGAAATTAAGAAGGAGGAGCTTA TCCAGAAGAATCTGGAGATGGAAGCCAACGTTGAAGATATCGATACAGATGATGAGTTGAATGAAGCAGAGGAGTACGAGGCTTGGAAAGTGAGGGAGAT CGGGAGGATCAAGCGAGATAGGGATGCTCGGGAGGCGATGGTGAAGGAGAAGGAAGAGATCGAGAGGGTGAGGAATATGACAGAGGAAGAGAGGAGGGAA TGGGAGAGGAAGAATCCGAAACCTGCTCCTGCACAGAAGCAGAAGTGGAGGTTTATGCAGAAGTACTTCCACAAAGGAGCATTCTTTCAGGACGAGCCTG ATGATCAAGCTGCGAGTGCTGGGTCGGATAACATTTATACGAGAGATTTCTCTGCACCTACCGGTGATGATAAGATGGACAAGACCATATTGCCTAAGGT TATGCAGGTGAAGCACTTTGGCCGCAGCGGGAGGACGAAATGGACTCATCTTGTTAATGAGGATACGACTGATTGGGAGAATCCATGGACATACAACGAC CCCCTTCGAGCAAAGTACAACGCGAAGATGGCTGGAATGAACGCTCCGATTGAGAAACCTAAAGGAAGCAAGAAGCTGAAAGATTGGGAGACGAAATAA
AA sequence Show only first row Show all	>Lus10005672 pacid=23168878 polypeptide=Lus10005672 locus=Lus10005672.g ID=Lus10005672.BGIv1.0 annot-version=v1.0 MSVTAGVSDAALAIREKLKGKIGQTKVTRYWPGKAPEWAEEGDEDGDIRTSRLDNLERAFPTHEGGSTDLSGRDDPRLRRLAVSRDDNRDEARADHRRIR QAEIVSTEEEERLQEGLDAEEEDEEERRRRIKEKMRRQREQEEAMLLPVEEEEEEEEEDEEESEYETDSEEETTGMAMLKPVFVPKSERDTIAERERLEE EERALEEKVKKKVEERKLETKQILLEEIKKEELIQKNLEMEANVEDIDTDDELNEAEEYEAWKVREIGRIKRDRDAREAMVKEKEEIERVRNMTEEERRE WERKNPKPAPAQKQKWRFMQKYFHKGAFFQDEPDDQAASAGSDNIYTRDFSAPTGDDKMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWENPWTYND PLRAKYNAKMAGMNAPIEKPKGSKKLKDWETK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	0	1
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10017725 [exp]	1.0	0.9033
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10012902 [exp]	1.4	0.8799
AT5G08450			unknown protein		Lus10004299 [exp]	3.2	0.8520
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10017919 [exp]	3.5	0.8589
AT5G19490	CCAAT		Histone superfamily protein (....		Lus10026780 [exp]	4.0	0.8551
AT3G07930			DNA glycosylase superfamily pr...		Lus10001994 [exp]	4.7	0.8217
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10011167 [exp]	5.1	0.8165
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	7.0	0.8422
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10021746 [exp]	7.5	0.8161
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10030555 [exp]	9.2	0.8198

Compare expression of checked genes

Lus10005672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.