Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17850 263 / 7e-82 Sodium/calcium exchanger family protein (.1) AT5G17860 243 / 6e-74 CAX7 calcium exchanger 7 (.1) AT3G14070 218 / 7e-64 ATCCX3, CAX9 CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1) AT1G54115 215 / 4e-63 ATCCX4 cation calcium exchanger 4 (.1) AT1G08960 94 / 3e-20 CCX5, AtCXX5, ATCAX11, CAX11 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020318 [exp] 604 / 0 AT5G17850 464 / 2e-157 Sodium/calcium exchanger family protein (.1) Lus10013634 [exp] 397 / 2e-133 AT5G17850 512 / 4e-177 Sodium/calcium exchanger family protein (.1) Lus10001329 [exp] 390 / 2e-130 AT5G17850 505 / 8e-174 Sodium/calcium exchanger family protein (.1) Lus10013635 [exp] 240 / 5e-73 AT5G17860 540 / 0.0 calcium exchanger 7 (.1) Lus10001330 [exp] 234 / 1e-70 AT5G17860 552 / 0.0 calcium exchanger 7 (.1) Lus10015668 [exp] 215 / 2e-65 AT1G54115 484 / 8e-168 cation calcium exchanger 4 (.1) Lus10037681 [exp] 216 / 2e-63 AT1G54115 763 / 0.0 cation calcium exchanger 4 (.1) Lus10037682 [exp] 215 / 8e-61 AT1G54115 758 / 0.0 cation calcium exchanger 4 (.1) Lus10004469 [exp] 96 / 1e-20 AT1G08960 642 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065900 [exp] 318 / 4e-103 AT5G17850 508 / 1e-175 Sodium/calcium exchanger family protein (.1) Potri.019G040301 [exp] 292 / 2e-93 AT5G17850 393 / 2e-131 Sodium/calcium exchanger family protein (.1) Potri.013G065800 [exp] 244 / 1e-74 AT5G17860 420 / 9e-141 calcium exchanger 7 (.1) Potri.019G040200 [exp] 233 / 4e-70 AT5G17860 449 / 2e-152 calcium exchanger 7 (.1) Potri.003G066900 [exp] 201 / 1e-57 AT1G54115 802 / 0.0 cation calcium exchanger 4 (.1) Potri.001G167200 [exp] 184 / 2e-51 AT1G54115 811 / 0.0 cation calcium exchanger 4 (.1) Potri.013G025100 [exp] 92 / 7e-20 AT1G08960 603 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10005673 pacid=23168895 polypeptide=Lus10005673 locus=Lus10005673.g ID=Lus10005673.BGIv1.0 annot-version=v1.0 ATGGTAGGTGGAGCTTCGTTCGTTGTCTGTGTTGTCGTTGGAAGCATTTGTTTTGCTGTTAAGGGTAGTAGGAAGGAGAAGAATGTTGTGTCAGCAGTTA GGGTTAGCCAGAGTGCTTTTCTTAGGGATGTGTTCTTCTTGCTCTTGGTGCTTGGTTCCTTGGTGGTCACTCTTCTTTTGAAGGAGATTTTTCTCTGGGG TGCTGTTGGGTTCTCGTTGATGTATGTTGTTTATGTGATCGTGGTGTATATTTTGAGTAGACGGCCACGATCGTGTGTTGTTTGTGGTAGTTGTGGTATC GGTGCCGGTACTCCGGCTTCGAGTTGGGAGAGTGGGTTGAGTATACCTTTGTTGATGAACAAGGAGGATGGAGGTGGTTTGAAATCGACTTGTTGTAGTA GTGCTAGTACGAGTACGAGTACGAGTGCTTGTACTAGTACGAATACTAGTCCTGGTTCGAGTTGCGAGACTGGGTTGAGTATACCGATATTGATGAACAA GGAGAATGTGGAGGAAGGAGGGCGGCGCGGAGGAGAGGAAGAGATGAGGAGGTGGTGGTACAATGTGAGGGCATCAAGACAATGTAGCTCGATGCTATGG ATAGTGGAGATGCCGCTCTCGTTGCCTCGCAGATGGACGATCCCTGTCATATGTGAGGAGAAATGGTCGAAGCCGATGGCGGTAGCTTCCGTGGTGTGTG CTCCAATTCTGCTTTCGTCTCTATTGATCGCGCAGTACGAGAGTCCGAGCGATCGGGTACTTGTGGTTGTGTACTCGGTCGGTTGTACGATCGGGATCGT GCTGGGAGCGATTGCATATGCCACAACCGATACATCGCACCCTCCGGAAGGGAAAAGGTTCCGACTTCCATGGCTAGCGGGAGGGTTCTTGATGAGCGTG ACATGGAGCTACATCACGGCACAAGAATTGGTGGCGTTGCTCGTGTCGATGGGGTACATTCTCTGTATAAGTCCTTCGATTCTAGGGCTAACTGTACTTG CATGGGGCAACTCGATCTCGGATTTGATAACCAATTTGACAATGGCTATCAATGGTGGTCCTGAAGGTGTGCAAGTGGCCATATCAGGGTGTTACGCTGG CCCAATCTTCAACATCCTGTTTGGACTCGGGTTGTCCCTGGTCGGTTCTTGTTGGGAATCGTACCCAGAACCGGTTTCCATCTCGTTGGACCCGTATCTA CTCGAGACGTTAGGGTTTCTGCTGGCCGGTTTGATGTGGGCATTGGTGGTGTTGCCTAGAAGAGGAATGAAGCTTGATGGTGTCCTTGGTGGTGGCCTTT TGGTAATTTACCTGATGTCTGTTACTCTTAGGCTTGTTCAAACCTCTGGCTCACTTCAGTTCTATGCCTATAACATGTAA
AA sequence Show only first row Show all	>Lus10005673 pacid=23168895 polypeptide=Lus10005673 locus=Lus10005673.g ID=Lus10005673.BGIv1.0 annot-version=v1.0 MVGGASFVVCVVVGSICFAVKGSRKEKNVVSAVRVSQSAFLRDVFFLLLVLGSLVVTLLLKEIFLWGAVGFSLMYVVYVIVVYILSRRPRSCVVCGSCGI GAGTPASSWESGLSIPLLMNKEDGGGLKSTCCSSASTSTSTSACTSTNTSPGSSCETGLSIPILMNKENVEEGGRRGGEEEMRRWWYNVRASRQCSSMLW IVEMPLSLPRRWTIPVICEEKWSKPMAVASVVCAPILLSSLLIAQYESPSDRVLVVVYSVGCTIGIVLGAIAYATTDTSHPPEGKRFRLPWLAGGFLMSV TWSYITAQELVALLVSMGYILCISPSILGLTVLAWGNSISDLITNLTMAINGGPEGVQVAISGCYAGPIFNILFGLGLSLVGSCWESYPEPVSISLDPYL LETLGFLLAGLMWALVVLPRRGMKLDGVLGGGLLVIYLMSVTLRLVQTSGSLQFYAYNM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17850			Sodium/calcium exchanger famil...		Lus10005673 [exp]	0	1
AT3G03550			RING/U-box superfamily protein...		Lus10009326 [exp]	1.7	0.9355
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Lus10005966 [exp]	2.0	0.9297
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015570 [exp]	3.5	0.9236
AT1G18740			Protein of unknown function (D...		Lus10018883 [exp]	5.3	0.9168
AT5G17850			Sodium/calcium exchanger famil...		Lus10020318 [exp]	5.5	0.9174
AT3G07870			F-box and associated interacti...		Lus10038606 [exp]	6.5	0.9172
AT1G18740			Protein of unknown function (D...		Lus10028578 [exp]	7.4	0.9079
AT5G61660			glycine-rich protein (.1)		Lus10032507 [exp]	8.8	0.8650
AT4G14740			Plant protein of unknown funct...		Lus10041187 [exp]	9.6	0.9212
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Lus10030243 [exp]	9.9	0.8873

Compare expression of checked genes

Lus10005673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.