Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09670 421 / 2e-147 Oxidoreductase family protein (.1) AT1G34200 357 / 2e-122 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1) AT1G66130 258 / 9e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013633 [exp] 466 / 2e-165 AT4G09670 486 / 4e-173 Oxidoreductase family protein (.1) Lus10001327 [exp] 456 / 2e-161 AT4G09670 484 / 1e-172 Oxidoreductase family protein (.1) Lus10002180 [exp] 223 / 6e-71 AT1G66130 239 / 3e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039898 [exp] 155 / 2e-45 AT1G66130 212 / 1e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004425 [exp] 66 / 2e-12 AT4G09670 48 / 1e-06 Oxidoreductase family protein (.1) Lus10020317 [exp] 0 / 1 AT4G09670 69 / 2e-24 Oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G200200 [exp] 446 / 2e-157 AT4G09670 521 / 0.0 Oxidoreductase family protein (.1) Potri.005G200300 [exp] 444 / 1e-156 AT4G09670 522 / 0.0 Oxidoreductase family protein (.1) Potri.017G137300 [exp] 348 / 9e-119 AT1G66130 382 / 2e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02894 [flax] [poplar] GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta domain CL0063 [flax] [poplar] NADP_Rossmann PF01408 [flax] [poplar] GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold
Representative CDS sequence Show only first row Show all	>Lus10005674 pacid=23168915 polypeptide=Lus10005674 locus=Lus10005674.g ID=Lus10005674.BGIv1.0 annot-version=v1.0 ATGTCGGAGCCCAAGATCCGATTCGGGATAATCGGGTGTGCGGACATAGCCAGGAAGCTAGCCAGAGCAATCACCCAATCACCAAACTCCGAGCTCTCCG CCGTCGCCAGCCGGACTCTTGAAAAGGCCACCGCTTTCGCTGCGGCGAACAATCTGCCGCCGACGGTAAAGATCTACGGTTCGTACGCGTCTTTACTCGA CGATCCAGAGATTGACACCGTGTATATCCCGTTACCCACCAGTCTTCACTTGGAGTGGGTTACTCTGGCCGCTGAGAAGAAGAAGCATGTGTTGCTGGAG AAGCCGGTTGCGGTTAACGTGGATGAGCTGGATAAGATTCTGGCGGCGTGTGATGATAACGGCGTTCAGTTTATGGACGGGACGATGTGGGTTCATCATC CGAGGACTGTTAAGATGAAGGAGGTCATCGATCGGAGGGATGAGTTTGGGGAGCTGCGAACTGTACATAGCTGCCTAACATTCGCCGCCGACGACACCTT CCACAAGTCCAACATTCGAGCCAACCCGAAACTCGACTCCCTCGGCGCACTAGGCGACGTAGGATGGTACTGCATATACTCAATCCTCTGGGCAAACAAC TACCACCTCCCCAAAACCCTAACCGCCACTCCGGACGCCGTCATCTCACCCGCCGGAGTCATCCTATCCTGCGGAGCTTCCCTCCAATGGGAGGACGCCA AATCAGCAACGTTCCACTGCTCGTTCCTGACCAACTTCACCTCGACCGTCACGGCAATGGGGACGAAGGCGACCTTACAGCTAGCCGATTTCGTGATCCC GGTGGCGGAGACGGAGGCGGCGTTCACAGTGGCCGTGGAGAGTCGGGTGGATGAGCTTATGACGAAGTGGGAGAGCGATGGGCTGCCTAGGAAGGTGGTT GTGGAGAATGAGCTGCCACAGGAGGTTTGTATGGTGAGGGAGATGAGCCGGTTGGTAGCGGCGGTGAAGGGTGGCGGTGGGGTTGATCGGAGTTGGGGTG ATCGGAGTAGGAAGGTTCAGAGGGTTTTGGATTGTGTTAGGGTCTCGATTGAGAATGGTTATCAGCCTGTTGAGATCGATAACTGA
AA sequence Show only first row Show all	>Lus10005674 pacid=23168915 polypeptide=Lus10005674 locus=Lus10005674.g ID=Lus10005674.BGIv1.0 annot-version=v1.0 MSEPKIRFGIIGCADIARKLARAITQSPNSELSAVASRTLEKATAFAAANNLPPTVKIYGSYASLLDDPEIDTVYIPLPTSLHLEWVTLAAEKKKHVLLE KPVAVNVDELDKILAACDDNGVQFMDGTMWVHHPRTVKMKEVIDRRDEFGELRTVHSCLTFAADDTFHKSNIRANPKLDSLGALGDVGWYCIYSILWANN YHLPKTLTATPDAVISPAGVILSCGASLQWEDAKSATFHCSFLTNFTSTVTAMGTKATLQLADFVIPVAETEAAFTVAVESRVDELMTKWESDGLPRKVV VENELPQEVCMVREMSRLVAAVKGGGGVDRSWGDRSRKVQRVLDCVRVSIENGYQPVEIDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09670			Oxidoreductase family protein ...		Lus10005674 [exp]	0	1
AT5G09680		RLF	reduced lateral root formation...		Lus10039342 [exp]	1.4	0.9519
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	3.6	0.9555
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042316 [exp]	4.0	0.9483
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10014075 [exp]	4.0	0.9428
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10041643 [exp]	4.9	0.9415
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033743 [exp]	9.0	0.9492
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10022583 [exp]	11.0	0.9476
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	11.5	0.9461
AT1G76070			unknown protein		Lus10005623 [exp]	12.6	0.9244
					Lus10038520 [exp]	12.7	0.9426

Compare expression of checked genes

Lus10005674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.