Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03690 412 / 2e-141 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 380 / 2e-128 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G15050 370 / 3e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 370 / 4e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G03340 365 / 6e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G03520 352 / 1e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G15350 354 / 2e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G53100 347 / 2e-115 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT2G37585 300 / 1e-97 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 259 / 6e-82 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020316 [exp] 737 / 0 AT3G03690 457 / 1e-160 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 380 / 5e-128 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 379 / 6e-128 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030084 [exp] 366 / 1e-122 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 365 / 4e-122 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 359 / 4e-120 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10033714 [exp] 358 / 1e-119 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10019477 [exp] 357 / 2e-119 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10031626 [exp] 344 / 5e-114 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G066200 [exp] 476 / 2e-166 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 378 / 1e-127 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 375 / 4e-126 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.004G130300 [exp] 363 / 2e-121 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G399500 [exp] 362 / 2e-121 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 360 / 2e-120 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.011G119600 [exp] 355 / 1e-118 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.009G003300 [exp] 345 / 1e-114 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 333 / 8e-110 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G114800 [exp] 285 / 1e-91 AT1G71070 581 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10005676 pacid=23168883 polypeptide=Lus10005676 locus=Lus10005676.g ID=Lus10005676.BGIv1.0 annot-version=v1.0 ATGGGAATCATCAAGCTCTCAATGATCTCATTCATCCTAATCACCCTCCTCTACTCCTCATTCCTCCTCTACTTCCCTTCCCATCCCTCACTCGCCACAG CCCCTTCCTCCCCTTCACGCGCCGCCGAAGGCGGCAACAGCAACGGTAACACCCACCTGCGCCTCCACCGGCCATACCCCGTCCGATTCGCCTACCTAAT CTCTGCATCAAGAGGGGATTTCAAGAAGCTGTCACGCTTAATCAAGGCCCTCTACCACCCTGCCAACTACTACCTGATCCACCTGGACTCCGACGCTCCG CCGCCTGAGCACCAACTGCTGTCGGAGTTCATCTCCGGCGATGAAGTTTTCAGGAGAATGGGGAATGTTTGGGTCGTCGAGAAACCGAATCTGGTTACCT ACAGAGGGCCGACGATGCTTGCGACTACGCTGCACGCGATTGCGATCCTGCTGAGGAAAGCTGGCGATTGGGATTGGTTTGTGAATCTCAGTGCTTCTGA TTATCCTCTGGTTACTCAAGATGATCTGATCGAGGCGTTTTCTGGGTTGCCGAGGAATCTGAACTTCGTTCAGCATAGTAGCCGGTTGGGTTGGAAACTG AATAGGAGGGCGAAGCCAATAATGATAGATCCAGGGTTGTACAGCAGCAACAAATCAGAGATCTGGTGGGTTAATAATAAACAAAGGTCAATCCCCACTG CCTTCAAGCTCTACACAGGTTCAGCGTGGACGATCCTATCGAGATCATTCATGGAGTACACAATCCTAGGCTACGAAAACCTGCCCAGGGCACTCCTCCT ATACTACACGAACTTCGTGTCCTCCCATGAGGGCTACTTCCAGACACTGATATGCAACTCCGGCGAGTTCAGAAACACCACTGCCAACCATGACCTCCAC TACATTGAGTGGGACAACCCGCCGAAGCAACACCCGAAGCACCTGACCCTAAGGGACTACCGTCGGATGATCCTCAGCGGGCGACCGTTCGCTCGGAAGT TCAAGCAGAACGACCCTGTCCTCGACAGGATCGACCGGGTCCTCCTCAGGAGGTCCCACAACAATGGAAACTTTGGGTATGGGAGGTGGTGTGTTGATAG TGATGGGTTTAGTACTAGTGTTGGTGGGAAGAGGTGGAATAGTGGTGGGTGCCCTACCTTGGTGGATGTTGAGAGGGTTAGGTTTGGGCCTTTGGATCCC GGGCCGGGCTTTCGGAGGCTGAAAAGCCTGCTTGGGAAATTAGTGGCTCGAGATGGATTCACCAAGCGCCAATATATGGTGATGAAGAATGCCTTATTGT TACTTCTCGTTCTCTTGCTACCTTTCTCCCATGGAGTCACTAGAAGCCATATGATGGGAATAAGATCAACCAATATTATTAAGGGTAGGAGAGTAGTGGG TATTGGAGAAGAAGAGATTGAAAATTTCGATGATTGGGGAAGGAGGGATATGGAGCAGGTCACTGACTATCCTGATCCTGGAGCAAACGATCGTCATGAT CCTAAAATTCCTTGA
AA sequence Show only first row Show all	>Lus10005676 pacid=23168883 polypeptide=Lus10005676 locus=Lus10005676.g ID=Lus10005676.BGIv1.0 annot-version=v1.0 MGIIKLSMISFILITLLYSSFLLYFPSHPSLATAPSSPSRAAEGGNSNGNTHLRLHRPYPVRFAYLISASRGDFKKLSRLIKALYHPANYYLIHLDSDAP PPEHQLLSEFISGDEVFRRMGNVWVVEKPNLVTYRGPTMLATTLHAIAILLRKAGDWDWFVNLSASDYPLVTQDDLIEAFSGLPRNLNFVQHSSRLGWKL NRRAKPIMIDPGLYSSNKSEIWWVNNKQRSIPTAFKLYTGSAWTILSRSFMEYTILGYENLPRALLLYYTNFVSSHEGYFQTLICNSGEFRNTTANHDLH YIEWDNPPKQHPKHLTLRDYRRMILSGRPFARKFKQNDPVLDRIDRVLLRRSHNNGNFGYGRWCVDSDGFSTSVGGKRWNSGGCPTLVDVERVRFGPLDP GPGFRRLKSLLGKLVARDGFTKRQYMVMKNALLLLLVLLLPFSHGVTRSHMMGIRSTNIIKGRRVVGIGEEEIENFDDWGRRDMEQVTDYPDPGANDRHD PKIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10005676 [exp]	0	1
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10020316 [exp]	1.0	0.9615
AT3G10700		GalAK	galacturonic acid kinase (.1)		Lus10025946 [exp]	1.7	0.9407
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10003270 [exp]	2.0	0.9408
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10000787 [exp]	2.0	0.9407
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10033379 [exp]	7.7	0.9320
AT2G01070			Lung seven transmembrane recep...		Lus10005732 [exp]	8.1	0.9268
AT3G11700		FLA18	FASCICLIN-like arabinogalactan...		Lus10016194 [exp]	8.5	0.9152
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10003188 [exp]	8.7	0.9242
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10025800 [exp]	9.2	0.9190
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10032298 [exp]	9.5	0.9246

Compare expression of checked genes

Lus10005676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.