Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39660 187 / 2e-54 DOF CDF2, AtDof5. 2 cycling DOF factor 2 (.1.2) AT5G62430 169 / 4e-49 DOF CDF1, AtDof5,5 cycling DOF factor 1 (.1) AT3G47500 172 / 7e-49 DOF CDF3, AtDof3,3 cycling DOF factor 3 (.1) AT1G69570 144 / 9e-39 DOF AtDof1,10 Dof-type zinc finger DNA-binding family protein (.1) AT1G29160 135 / 4e-38 DOF AtDof1. 5 Dof-type zinc finger DNA-binding family protein (.1) AT2G34140 127 / 8e-35 DOF AtDof2. 3 Dof-type zinc finger DNA-binding family protein (.1) AT1G26790 127 / 9e-33 DOF AtDof1,3 Dof-type zinc finger DNA-binding family protein (.1) AT4G24060 106 / 1e-25 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT3G55370 104 / 1e-24 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT5G60850 103 / 1e-24 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020315 [exp] 737 / 0 AT5G62430 201 / 7e-60 cycling DOF factor 1 (.1) Lus10020314 [exp] 627 / 0 AT5G62430 196 / 8e-59 cycling DOF factor 1 (.1) Lus10019093 [exp] 179 / 4e-51 AT3G47500 330 / 8e-109 cycling DOF factor 3 (.1) Lus10034461 [exp] 177 / 1e-50 AT3G47500 331 / 2e-109 cycling DOF factor 3 (.1) Lus10037167 [exp] 150 / 4e-41 AT5G39660 214 / 5e-65 cycling DOF factor 2 (.1.2) Lus10036760 [exp] 139 / 9e-38 AT5G39660 200 / 1e-60 cycling DOF factor 2 (.1.2) Lus10013905 [exp] 130 / 4e-36 AT2G34140 171 / 9e-55 Dof-type zinc finger DNA-binding family protein (.1) Lus10001896 [exp] 128 / 4e-35 AT2G34140 172 / 3e-55 Dof-type zinc finger DNA-binding family protein (.1) Lus10010113 [exp] 102 / 3e-24 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G066700 [exp] 254 / 4e-79 AT3G47500 157 / 2e-42 cycling DOF factor 3 (.1) Potri.019G040700 [exp] 250 / 3e-78 AT5G39660 154 / 1e-41 cycling DOF factor 2 (.1.2) Potri.017G084600 [exp] 213 / 5e-64 AT5G39660 314 / 3e-102 cycling DOF factor 2 (.1.2) Potri.004G121800 [exp] 207 / 1e-61 AT3G47500 293 / 5e-94 cycling DOF factor 3 (.1) Potri.008G087800 [exp] 190 / 2e-55 AT3G47500 249 / 2e-77 cycling DOF factor 3 (.1) Potri.010G167600 [exp] 180 / 1e-51 AT3G47500 257 / 2e-80 cycling DOF factor 3 (.1) Potri.011G065900 [exp] 126 / 8e-35 AT1G29160 155 / 7e-49 Dof-type zinc finger DNA-binding family protein (.1) Potri.004G056900 [exp] 125 / 3e-34 AT1G29160 186 / 7e-61 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G131600 [exp] 107 / 1e-26 AT3G50410 126 / 3e-35 OBF binding protein 1 (.1) Potri.003G034200 [exp] 105 / 4e-26 AT1G51700 136 / 7e-40 DOF zinc finger protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10005677 pacid=23168912 polypeptide=Lus10005677 locus=Lus10005677.g ID=Lus10005677.BGIv1.0 annot-version=v1.0 ATGGGAACTGATGGAGGAATGAGGAGCAGTTCTCCTTTCTGCAGAGATCCAGCTATCAAGCTCTTTGGCAGGAAGATTGCTGTCCCTGATTCACTGATTC AGGCCATCCCTCCTTCCGAGAGTAATGGCTGTAGCAACAATGATGAGAAAGCTAACAAAGAAGGGAATTCTCCCATGGAAGAGCAAGAACAACAATCATC ATCAGAAGTCATGAAGAAGCCGGACAAGGTGATACCGTGTCCACGATGCAACAGCATGGAGACCAAATTCTGCTACTTCAACAACTACAATGTGAACCAG CCAAGACACTTCTGCAAGAACTGCCAGAGGTACTGGACAGCTGGCGGCACCATGAGGAACGTCCCCATTGGCGCTGGCCGCAGGAAGAACAAGCATCTCG CCTCTCACTATCGCCAGATCCTCGTCGAGAAGAATCCCGAGAATTCACCCCCTCCCGAACAACCTGTGGTTAGTTGTCCTTCAGTGGTTCTGAAATTTGG TCATGAAGAAGTTTCACTCCAACAACCACCATTGTGTCAGTCAATGCAGAATTTGCTCAACATTGGATCAGAAAAATCGAGTCTTGTCGATCGGAGTGGA GGGGAGGAGGCCTCCACGTCCGAGAATGTCACCTCCAGGATCGATCGAGATCCTGAAGGTGACATTGACCGGTCTTCTTCTGAAGACCGGAACACCACTC AACTTAATCCTCCCTTGCAATGCTACCCTGTGACACCATTGATTGTCCCTTGGAACTGGAATGGTGTGGCTCAGTATCCGAATCAAGTCCAGCTATGTCC TACTAGTGCACCTATGTTGGCTATCCCGCCAGGATACTCTCCACCGTTACAGTTCCTTCCTGCAGCATCATACCTGATGTGGGCTACTACAACACCTCAA AGTTGTCAATCTCCAACATCTTCCACCAGCTCCCTAGGGAAGCACTCTCGAGACTCGAATGACGAGGATCAGAAAGCGGAGGAGGAGAAGACAGTACTAG TAGTTCCAAAGACACTGAGGATCGATGAGAGTTCCTTATGGTCTAGTGCTGCTGCTGCGCTGAGTCCAAAACAGGAACAACAGCCAAGTAGTGTTCTTGT GAGCAAAGGCAGCATCTTTCGAACTTTCGATGCGAAATTGGATAATGCCAAAGTCGCCCATGTTGTTCCTGATTCTTCTGCTCATATACTTGAAGCTAAC CCGGCTGCACTTTCGCGGTCCCTCTCGTTCAAGGAAGGTAGCTAG
AA sequence Show only first row Show all	>Lus10005677 pacid=23168912 polypeptide=Lus10005677 locus=Lus10005677.g ID=Lus10005677.BGIv1.0 annot-version=v1.0 MGTDGGMRSSSPFCRDPAIKLFGRKIAVPDSLIQAIPPSESNGCSNNDEKANKEGNSPMEEQEQQSSSEVMKKPDKVIPCPRCNSMETKFCYFNNYNVNQ PRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASHYRQILVEKNPENSPPPEQPVVSCPSVVLKFGHEEVSLQQPPLCQSMQNLLNIGSEKSSLVDRSG GEEASTSENVTSRIDRDPEGDIDRSSSEDRNTTQLNPPLQCYPVTPLIVPWNWNGVAQYPNQVQLCPTSAPMLAIPPGYSPPLQFLPAASYLMWATTTPQ SCQSPTSSTSSLGKHSRDSNDEDQKAEEEKTVLVVPKTLRIDESSLWSSAAAALSPKQEQQPSSVLVSKGSIFRTFDAKLDNAKVAHVVPDSSAHILEAN PAALSRSLSFKEGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10005677 [exp]	0	1
AT5G53000		TAP46	2A phosphatase associated prot...		Lus10041409 [exp]	1.4	0.9003
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	7.9	0.8843
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	11.0	0.8816
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	15.8	0.8613
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10013402 [exp]	16.7	0.8395
AT1G04300			TRAF-like superfamily protein ...		Lus10021218 [exp]	21.0	0.8480
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10040030 [exp]	28.1	0.8111
AT5G49690			UDP-Glycosyltransferase superf...		Lus10027850 [exp]	33.7	0.8691
AT2G26920			Ubiquitin-associated/translati...		Lus10026781 [exp]	36.3	0.8657
AT5G10820			Major facilitator superfamily ...		Lus10026890 [exp]	36.4	0.8679

Compare expression of checked genes

Lus10005677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.