Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27870 146 / 2e-40 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33230 140 / 2e-38 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26450 138 / 1e-37 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 138 / 2e-37 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 135 / 8e-37 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10720 125 / 2e-35 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT1G02810 129 / 9e-35 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 129 / 1e-34 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 129 / 2e-34 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 127 / 4e-34 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020313 [exp] 328 / 7e-113 AT5G27870 259 / 6e-80 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027656 [exp] 153 / 2e-44 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 154 / 2e-43 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028882 [exp] 140 / 2e-38 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10017119 [exp] 133 / 3e-38 AT4G33230 271 / 2e-87 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10002976 [exp] 138 / 8e-38 AT2G26450 429 / 2e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008937 [exp] 135 / 1e-36 AT3G10720 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Lus10018335 [exp] 134 / 3e-36 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 129 / 1e-34 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G010464 [exp] 145 / 2e-40 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G127000 [exp] 139 / 4e-38 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134500 [exp] 134 / 1e-36 AT4G33220 677 / 0.0 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) Potri.008G011100 [exp] 133 / 6e-36 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.010G247700 [exp] 131 / 2e-35 AT3G10720 746 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.013G013400 [exp] 131 / 2e-35 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 131 / 3e-35 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022800 [exp] 131 / 3e-35 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 130 / 4e-35 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247600 [exp] 129 / 2e-34 AT3G10710 609 / 0.0 root hair specific 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10005678 pacid=23168898 polypeptide=Lus10005678 locus=Lus10005678.g ID=Lus10005678.BGIv1.0 annot-version=v1.0 ATGTCAATTGACAACAGGGCGAAGAGAGCGGCGGGAAATTCCTCCTCAGCCGCCGCAGTAACGGCGGTGGCGGTTAGAGTTCAGGCGGATAAATCAGCGT TCTACAACTGCACGATCGAAGGCGGGAAATCAGCTCTCTACGCTTTGGCGCACCGCCAATTCTACAGCGGATGCAAGATTTCCGGATCGGGGGATCTGAT AATCGGCGATGCAGCGGCGGTGATTCAGGATTCGGAGATTCTCGTAAGCGGCGGCGGCGCGGTGACGGCGCAAGGGAGGGCGGAGAGGTACGAGACTACG GGGTTCGTGCTGCAGAACTGCACGGTGAAGGGGATTGGTGGCGGTGAGATTGTGTTGGGGAGGCCGTGGAGGAAGAGGTCGAGAGCGGTGGTGATGGAGT CGTATTTGGGGGGAAATGTGGCAGCAGAAGGGTGGAAGGTCACTGCCGTCGGAGGTGCCGGAGGAGGGGAGGTGGCGCCGGCGGAGGAGAAGTATTATTA CGCGGAGTTTGGAAACTATGGGCCAGGGTCGGGTACGGATAAGCGGGTTCGGGGCCCGAAGGTGCTGAATAAGGATGGGTCGGATGCGGTTCAGTATGGT CCGAGTTTGTTTATTCAAGGGGATGAGTGGATTGCTCAGGCTGGTGTGCCGTTTCGCGGAGGATTATAA
AA sequence Show only first row Show all	>Lus10005678 pacid=23168898 polypeptide=Lus10005678 locus=Lus10005678.g ID=Lus10005678.BGIv1.0 annot-version=v1.0 MSIDNRAKRAAGNSSSAAAVTAVAVRVQADKSAFYNCTIEGGKSALYALAHRQFYSGCKISGSGDLIIGDAAAVIQDSEILVSGGGAVTAQGRAERYETT GFVLQNCTVKGIGGGEIVLGRPWRKRSRAVVMESYLGGNVAAEGWKVTAVGGAGGGEVAPAEEKYYYAEFGNYGPGSGTDKRVRGPKVLNKDGSDAVQYG PSLFIQGDEWIAQAGVPFRGGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33230			Plant invertase/pectin methyle...		Lus10005678 [exp]	0	1
AT5G41020	MYB		myb family transcription facto...		Lus10022926 [exp]	1.4	0.8823
AT2G22140		ATEME1B	essential meiotic endonuclease...		Lus10006798 [exp]	1.4	0.8090
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	4.6	0.8009
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10013398 [exp]	5.5	0.7952
AT5G44310			Late embryogenesis abundant pr...		Lus10028304 [exp]	7.3	0.7720
AT5G49120			Protein of unknown function (D...		Lus10006499 [exp]	9.4	0.7957
AT5G43490			unknown protein		Lus10003153 [exp]	9.5	0.7853
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10028997 [exp]	12.7	0.7851
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026141 [exp]	15.7	0.6938
AT3G14900		EMB3120	EMBRYO DEFECTIVE 3120, unknown...		Lus10000244 [exp]	18.6	0.7389

Compare expression of checked genes

Lus10005678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.