Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) AT5G17820 338 / 3e-116 Peroxidase superfamily protein (.1) AT3G03670 325 / 4e-111 Peroxidase superfamily protein (.1) AT1G34510 307 / 3e-104 Peroxidase superfamily protein (.1) AT5G22410 274 / 9e-91 RHS18 root hair specific 18 (.1) AT5G42180 251 / 9e-82 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G06720 250 / 3e-81 ATPA2 peroxidase 2 (.1) AT1G05260 249 / 7e-81 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G51890 248 / 1e-80 Peroxidase superfamily protein (.1) AT3G01190 246 / 5e-80 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020312 [exp] 595 / 0 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10001324 [exp] 457 / 6e-163 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10013631 [exp] 454 / 2e-161 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10005681 [exp] 343 / 1e-117 AT5G17820 294 / 9e-99 Peroxidase superfamily protein (.1) Lus10004859 [exp] 295 / 3e-99 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10043010 [exp] 283 / 2e-94 AT5G22410 300 / 9e-101 root hair specific 18 (.1) Lus10032511 [exp] 283 / 3e-94 AT5G22410 302 / 8e-102 root hair specific 18 (.1) Lus10018375 [exp] 277 / 6e-92 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10031664 [exp] 266 / 6e-88 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G066800 [exp] 399 / 2e-139 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.015G110200 [exp] 286 / 1e-95 AT5G22410 340 / 1e-116 root hair specific 18 (.1) Potri.007G122200 [exp] 270 / 2e-89 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 269 / 6e-89 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 268 / 2e-88 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 266 / 7e-88 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 266 / 7e-88 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 266 / 7e-88 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 266 / 7e-88 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 266 / 1e-87 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10005679 pacid=23168879 polypeptide=Lus10005679 locus=Lus10005679.g ID=Lus10005679.BGIv1.0 annot-version=v1.0 ATGCTAGCCAAAACATCCATACTTGTGGTTGTGTTCCTTCTATGTAATGTCTTCGGTTTGGTTCCCTCGGTGACCGGTTTACAAGTCGGGTTTTACCGGT CGACTTGCCCACAGGCTGAAACTATTGTGCAGAATTTGGTTCAGAAGCAGTTTGGCACTGATAAGTCCATCGCCGCCGCTCTCATTCGCATGCACTTCCA CGACTGTTTCGTTAGGGGTTGCGATGCGTCGATCCTAATCGATTCGACTCCTCAAAAGCAATCCGAGAAATCAGCCGGCCCGAACCGATCGGTCAGAGGA TTCGAATTGATCGACTCGATCAAATCAGCGCTCGAATCCGCATGCCCTTCTAGAGTCTCTTGTGCAGACATCATCGCTCTAGCCACCCGCGATGTGGTCG CCCTAGCCGGAGGCCCCACATACCAACTCCCTACGGGACGGCTTGATGGCCTAATCTCGAACCCGGGCATCGTCAACCTCCCTGGTCCAACCGTACCGGT TACTCAAGCATTCAACCAGTTTTTCCGACCCTTGGGCTTCACCCTAACAGAAATGGTCACCCTTTTAGGGGGCCACACGGTTGGTGTGGCCCATTGCAAT TTCTTCCAGGACCGGATCTCTAACTTCCAGGGCACAGGTCGTCCTGACCCGTCGATGGACCCGAACTTGGCCGCCAGCCTCCGTCAGACTTGCGCCGGGA GCAACAATCCGACGGCCTTTTTGGACCAGAACACTTCGTTCGTTGTTGATAATTCGTTCTACAGGGAGATTGGTTTGAAGAAGGGCGTGATGCTGATTGA TCAGGCGATTGCTACCGACCGGTCTACGTCGGCGATCGTGTCCGGTTTGGCGAGGAGCGAGGCGGGTTTCCGGCAGGGGTTTGCAGCGGCGATGGTGAAG ATGGGGAATCTAGTTGGGAGTGGAGGAGAAATCAGGAAGAGCTGTCGGGTTTTCAATCCGAAGAAGGCCGGCGGTAGTTGA
AA sequence Show only first row Show all	>Lus10005679 pacid=23168879 polypeptide=Lus10005679 locus=Lus10005679.g ID=Lus10005679.BGIv1.0 annot-version=v1.0 MLAKTSILVVVFLLCNVFGLVPSVTGLQVGFYRSTCPQAETIVQNLVQKQFGTDKSIAAALIRMHFHDCFVRGCDASILIDSTPQKQSEKSAGPNRSVRG FELIDSIKSALESACPSRVSCADIIALATRDVVALAGGPTYQLPTGRLDGLISNPGIVNLPGPTVPVTQAFNQFFRPLGFTLTEMVTLLGGHTVGVAHCN FFQDRISNFQGTGRPDPSMDPNLAASLRQTCAGSNNPTAFLDQNTSFVVDNSFYREIGLKKGVMLIDQAIATDRSTSAIVSGLARSEAGFRQGFAAAMVK MGNLVGSGGEIRKSCRVFNPKKAGGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26010			Peroxidase superfamily protein...		Lus10005679 [exp]	0	1
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040733 [exp]	2.8	0.8896
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039363 [exp]	7.1	0.8655
AT5G46490			Disease resistance protein (TI...		Lus10042465 [exp]	12.6	0.8259
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10021395 [exp]	13.4	0.8596
AT3G01190			Peroxidase superfamily protein...		Lus10018374 [exp]	13.5	0.8839
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029033 [exp]	15.0	0.8582
AT1G55210			Disease resistance-responsive ...		Lus10017228 [exp]	17.5	0.8857
AT2G36570			Leucine-rich repeat protein ki...		Lus10018255 [exp]	24.1	0.7944
AT5G05340			Peroxidase superfamily protein...		Lus10006535 [exp]	26.1	0.8342
					Lus10021703 [exp]	26.8	0.8547

Compare expression of checked genes

Lus10005679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.