Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17820 283 / 3e-94 Peroxidase superfamily protein (.1) AT3G03670 259 / 4e-85 Peroxidase superfamily protein (.1) AT5G22410 247 / 4e-80 RHS18 root hair specific 18 (.1) AT4G26010 242 / 2e-78 Peroxidase superfamily protein (.1) AT4G11290 224 / 2e-71 Peroxidase superfamily protein (.1) AT1G34510 223 / 4e-71 Peroxidase superfamily protein (.1) AT5G64120 219 / 4e-69 Peroxidase superfamily protein (.1) AT5G64100 217 / 2e-68 Peroxidase superfamily protein (.1) AT2G41480 216 / 7e-68 Peroxidase superfamily protein (.1) AT1G05260 214 / 2e-67 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013631 [exp] 343 / 9e-118 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10001324 [exp] 338 / 7e-116 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10005679 [exp] 338 / 9e-116 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10020312 [exp] 342 / 6e-111 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10004859 [exp] 242 / 4e-78 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10020311 [exp] 228 / 3e-75 AT5G17820 136 / 6e-40 Peroxidase superfamily protein (.1) Lus10018375 [exp] 234 / 6e-75 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10032511 [exp] 231 / 1e-73 AT5G22410 302 / 8e-102 root hair specific 18 (.1) Lus10043010 [exp] 229 / 8e-73 AT5G22410 300 / 9e-101 root hair specific 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G066800 [exp] 282 / 2e-93 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.015G110200 [exp] 240 / 2e-77 AT5G22410 340 / 1e-116 root hair specific 18 (.1) Potri.007G122451 [exp] 219 / 2e-69 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.016G125000 [exp] 217 / 1e-68 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 217 / 2e-68 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 216 / 5e-68 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 216 / 6e-68 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 216 / 7e-68 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 215 / 1e-67 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 215 / 1e-67 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10005681 pacid=23168876 polypeptide=Lus10005681 locus=Lus10005681.g ID=Lus10005681.BGIv1.0 annot-version=v1.0 ATGAAAATGCATCCGAGTTATTACAACGAGCTCACGATCACCTCTGCCATTATGATCACCATCACAACACTCTTCCTGATTTCATCCACTCAAACAACCG CCGCCGTCGTTCCGCAACCTCCCCTCACAATCGGCCACTACCGAGCAACCTGCCCACAAGCCGAAACCATCGTCCGACAAGTGGTCGGGAGAATGTTCGC CGCCGATCCATCCATCACCGCCGCCCTCCTCCGCATCCACTTCCACGACTGCTTCTCCAAGGGCTGCGATGCTTCCATCCTCATCGACCCCACGCCGCAA AACCCCACCCCGCAAAAGACGGCGCCGCCGAACAGGTCCATACGAGGTTTCAACATCATCGACGCCGTCAAAGGTGCTTTAGAGCTCGCCTGCCCCGCCA CCGTCTCGTGCGCCGATGCTATCGCGCTCGCCACGCGCGACGCAGTCGCTCTATCTTCCCGCGGAGGGATTACGTACCCCGTCCCGACCGGACGGCTGGA CGGGCTTGTCTCCGCCGTCGCCGACGTCAAGCTTCCGGCGCCGACTCAGTCTGTGTTTTTAGCCTTCACTCAGTTTTTCCAACCGTTGGGCTTTACCTTA CCTGAGATGGTTGTTTTATTGGGGGCCCATACAGTCGGGTCAACCCATTGCTCGCAGTTTCAGGACCGGTTGGTTAATTTCACGGGAACCGGACTGCCCG ACCCGAGTATGGATCCGGCCCTCGTTCAGGAGCTCATGGTCACGTGCGGTCGTGGTGGGGGCAATGCGACTGCGGCTTTGGATCAAGGGACGGAGTTCTC GTTCGATGGGTCATTTTATAGGGAGGTGGCGAGGAAGAGGGGAGTGTTGGCAATCGATCAGGAGTTGGGTACGAACCCGGTTACTTCGGGTATAGTTTCG AGATTGGGGAGGGAGGAATGGAGATTTAGGAGGAGCTTTGGTGCCGCTATGGTGAAGTTGGGGAGGCTTGGTGGAAGTGGAAGTGGTAAAATTAGGCAAA ATTGTAGTGTAATTTAA
AA sequence Show only first row Show all	>Lus10005681 pacid=23168876 polypeptide=Lus10005681 locus=Lus10005681.g ID=Lus10005681.BGIv1.0 annot-version=v1.0 MKMHPSYYNELTITSAIMITITTLFLISSTQTTAAVVPQPPLTIGHYRATCPQAETIVRQVVGRMFAADPSITAALLRIHFHDCFSKGCDASILIDPTPQ NPTPQKTAPPNRSIRGFNIIDAVKGALELACPATVSCADAIALATRDAVALSSRGGITYPVPTGRLDGLVSAVADVKLPAPTQSVFLAFTQFFQPLGFTL PEMVVLLGAHTVGSTHCSQFQDRLVNFTGTGLPDPSMDPALVQELMVTCGRGGGNATAALDQGTEFSFDGSFYREVARKRGVLAIDQELGTNPVTSGIVS RLGREEWRFRRSFGAAMVKLGRLGGSGSGKIRQNCSVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17820			Peroxidase superfamily protein...		Lus10005681 [exp]	0	1
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10024075 [exp]	1.0	0.9267
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	1.4	0.8927
AT5G17820			Peroxidase superfamily protein...		Lus10020311 [exp]	1.7	0.8744
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10029205 [exp]	4.9	0.8465
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10028262 [exp]	9.2	0.8377
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10016205 [exp]	13.6	0.8388
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10042082 [exp]	15.9	0.7820
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10033649 [exp]	18.3	0.7106
AT5G42120			Concanavalin A-like lectin pro...		Lus10042795 [exp]	18.9	0.7581
AT1G20823			RING/U-box superfamily protein...		Lus10015837 [exp]	22.3	0.6634

Compare expression of checked genes

Lus10005681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.