Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17770 471 / 9e-170 CBR1, ATCBR NADH:cytochrome B5 reductase 1 (.1) AT5G20080 209 / 5e-66 FAD/NAD(P)-binding oxidoreductase (.1) AT1G37130 178 / 1e-50 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 177 / 4e-50 GNR1, NIA1 nitrate reductase 1 (.1) AT1G15140 44 / 9e-05 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020310 [exp] 538 / 0 AT5G17770 474 / 5e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10026774 [exp] 443 / 1e-158 AT5G17770 425 / 1e-151 NADH:cytochrome B5 reductase 1 (.1) Lus10008407 [exp] 436 / 1e-155 AT5G17770 427 / 4e-152 NADH:cytochrome B5 reductase 1 (.1) Lus10033405 [exp] 380 / 8e-134 AT5G17770 359 / 2e-125 NADH:cytochrome B5 reductase 1 (.1) Lus10034869 [exp] 291 / 1e-98 AT5G17770 280 / 3e-94 NADH:cytochrome B5 reductase 1 (.1) Lus10014491 [exp] 210 / 5e-67 AT5G20080 475 / 1e-170 FAD/NAD(P)-binding oxidoreductase (.1) Lus10030059 [exp] 208 / 1e-65 AT5G20080 516 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Lus10038977 [exp] 179 / 1e-50 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1) Lus10027270 [exp] 178 / 2e-50 AT1G77760 1380 / 0.0 nitrate reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067300 [exp] 469 / 3e-169 AT5G17770 461 / 6e-166 NADH:cytochrome B5 reductase 1 (.1) Potri.004G194400 [exp] 446 / 7e-160 AT5G17770 428 / 4e-153 NADH:cytochrome B5 reductase 1 (.1) Potri.009G157000 [exp] 439 / 3e-157 AT5G17770 421 / 3e-150 NADH:cytochrome B5 reductase 1 (.1) Potri.010G246800 [exp] 401 / 3e-142 AT5G17770 379 / 1e-133 NADH:cytochrome B5 reductase 1 (.1) Potri.006G218600 [exp] 213 / 1e-67 AT5G20080 511 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Potri.005G172400 [exp] 168 / 4e-47 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 166 / 3e-46 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.015G068500 [exp] 120 / 1e-34 AT5G17770 104 / 1e-28 NADH:cytochrome B5 reductase 1 (.1) Potri.007G072750 [exp] 59 / 2e-11 AT5G17770 39 / 5e-05 NADH:cytochrome B5 reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00970 [flax] [poplar] FAD_binding_6 Oxidoreductase FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005682 pacid=23168873 polypeptide=Lus10005682 locus=Lus10005682.g ID=Lus10005682.BGIv1.0 annot-version=v1.0 ATGGATTTAGTGGAGTTCTTGCAGACTCTCGACCCGCAAATCCTCGCAGGTGTCGCCGTTGCTATCGTCGCCATTGTCATCGGAGCCATCTTCCTCCTCT CTCCCAAGAAACCCAGAGGTTGCTTAGACCCTGAGAACTTCAAGGAGTTTAAGCTAGTCAAACGCACTCAGCTTAGCCACAATGTTGCTAAGTTCTCCTT TGCTCTCCCTACGCCTACTTCAGTATTGGGTCTCCCCATTGGACAACACATAAGCTGCAGGGGGAAGGATAGTGTTGGGGAGGAAGTCACTAAACCGTAT ACACCAACTACGCTTGATTCTGATGTTGGACGCTTTGAGTTAGTTATTAAGATGTATCCACAAGGAAGAATGTCCCATCATTTCAGGGAGATGCGTGTCG GTGATTCTCTTGCTGTCAAAGGTCCCAAGGGGAGGTTCAAGTACCAGCCAGGCCAAGTTCGAGCTTTCGGGATGCTTGCTGGTGGTTCTGGCATTACACC AATGTTCCAAGTTGCTAGAGCTATACTAGAGAACCCGAAAGACCGTACCATGGTGCACCTTATTTATGCCAATGTAACTTATGATGACATTTTGTTGAAG GAGGAATTGGATGGCCTTGCTAGTCGGTACCCAGACCGATTCAAGATCTACTACGTCTTGAATCAGCCTCCGGAAGTATGGAATGGTGGAGTTGGCTTCG TTTCCAAGGAAATGATTCAGGCCCATTGCCCTGCTCCTGCTGCTGATGTCCAGATTCTTAGATGTGGACCGCCACCGATGAACAAGGCCATGGCTGGACA CATTGAAGCTCTTGGATATTCCCCTGAGATGCAGTTTCAGTTCTGA
AA sequence Show only first row Show all	>Lus10005682 pacid=23168873 polypeptide=Lus10005682 locus=Lus10005682.g ID=Lus10005682.BGIv1.0 annot-version=v1.0 MDLVEFLQTLDPQILAGVAVAIVAIVIGAIFLLSPKKPRGCLDPENFKEFKLVKRTQLSHNVAKFSFALPTPTSVLGLPIGQHISCRGKDSVGEEVTKPY TPTTLDSDVGRFELVIKMYPQGRMSHHFREMRVGDSLAVKGPKGRFKYQPGQVRAFGMLAGGSGITPMFQVARAILENPKDRTMVHLIYANVTYDDILLK EELDGLASRYPDRFKIYYVLNQPPEVWNGGVGFVSKEMIQAHCPAPAADVQILRCGPPPMNKAMAGHIEALGYSPEMQFQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10005682 [exp]	0	1
AT2G03350			Protein of unknown function, D...		Lus10026639 [exp]	3.5	0.9023
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10025876 [exp]	4.9	0.9189
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10027864 [exp]	9.7	0.9296
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10010403 [exp]	17.9	0.9061
AT2G28410			unknown protein		Lus10022579 [exp]	18.3	0.9172
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10038014 [exp]	19.1	0.9216
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10036738 [exp]	22.7	0.9024
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10039978 [exp]	26.7	0.9007
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	34.1	0.9080
AT1G18265			Protein of unknown function, D...		Lus10020457 [exp]	34.5	0.8531

Compare expression of checked genes

Lus10005682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.