Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45400 620 / 0 exostosin family protein (.1) AT3G03650 558 / 0 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT1G74680 488 / 6e-169 Exostosin family protein (.1) AT1G67410 313 / 4e-101 Exostosin family protein (.1) AT2G35100 254 / 6e-78 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G44930 239 / 2e-72 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT1G34270 216 / 4e-63 Exostosin family protein (.1) AT5G16890 214 / 2e-62 Exostosin family protein (.1) AT5G33290 87 / 6e-18 XGD1 xylogalacturonan deficient 1 (.1) AT5G25820 81 / 1e-15 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020308 [exp] 971 / 0 AT3G45400 622 / 0.0 exostosin family protein (.1) Lus10003870 [exp] 778 / 0 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10013627 [exp] 600 / 0 AT3G45400 524 / 0.0 exostosin family protein (.1) Lus10002060 [exp] 504 / 7e-175 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10024214 [exp] 440 / 3e-150 AT1G74680 468 / 3e-163 Exostosin family protein (.1) Lus10015791 [exp] 300 / 1e-95 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10037016 [exp] 298 / 1e-94 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10038355 [exp] 263 / 3e-81 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10036219 [exp] 260 / 4e-79 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067400 [exp] 696 / 0 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.019G044600 [exp] 679 / 0 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.002G210000 [exp] 523 / 0 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.008G034500 [exp] 305 / 6e-98 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.015G124800 [exp] 261 / 2e-80 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.012G124600 [exp] 255 / 5e-78 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.013G116200 [exp] 220 / 7e-65 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.019G086800 [exp] 216 / 3e-63 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 208 / 4e-60 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.005G055000 [exp] 147 / 2e-42 AT3G45400 145 / 5e-43 exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10005684 pacid=23168887 polypeptide=Lus10005684 locus=Lus10005684.g ID=Lus10005684.BGIv1.0 annot-version=v1.0 ATGGCGCTTCTTCTTCTTCATCAGAAACCAACATCCTATCCCTCAGCCAACTCTCTCCCACCCAATCTCCTGAAGAAAACCAGAAGAAACAAACATCACC TGAGTTTTCGTTTCCTGCCGTTGTTCATCAAGACCTCTGAATCAAAAGGATTATTGACATCTGAATCGAAAGTTTCGATCAGAAAATGGAGAGGCGATAA CACAGAACAGAGCATTCTCCGTTGCCGTCAGGGTCGCCGGAGGGAGAGGGGAAAGAAAATTTCTCCGATGGGTTCTTCTATAGCGAGGAAACTGGTCTTC TGCATGTTCCCGTTCATCTCCGCCGCGGTAATGCTGTCATCATGGGTGTTCGTCGTCCGCTCCTTCTCCGCCGGCCGTCCCAGCTTCCTCGACCGCGCGT TCTTGCCGGCGGTCACCACCCTCTCCGCCGTGGAAACAGAGTCGACGACGGCGATGCCTCGACCTTCCCGAGCTCGGGCGATCCTTGTCGATCGCGAGAT TGCAGGGCGGATTGAGAAGAACATTGTGAAGGTCCCCAAATGCAGTGACGGTCGGAAAACACGGCGGCAGAAGCAGCTGAAGGTGTTCATGTACGACATG CCGCCGGAGTTCCATTTCTCGCTACTGGAATGGAAGCCGGAGGAAAATGGCAATGTGTGGCCGGACGTGACAGCTCACATACCGGGATACCCAGGGGGGC TAAACCTGCAGCACAGCATAGAGTACTGGTTAACGCTGGACCTGTTGGCGTCCGAATTCCCGCACATTCCTCGAGGGTCGAGCGCGGTTCGAGTTAGGAA TTCGAGCGATGCGGATGTCGTGTTCGTGCCTTTCTTCTCGTCGCTTAGCTACAACCGGTACTCGAAGGTGGACCCGCACCAGAAGAAGAGCAGGAACAAC CTGCTGCAGGACAAGCTGGTGAGGTACTTAACATCACAGGAGGAGTGGAAGAGGTCTGGCGGGAGGGATCATCTGGTGATGGCTCACCATCCCAACAGCA TGCTGAGTGCCAGGATGAAGCTCTGGCCAGCGATGTTCGTGCTGTCCGATTTCGGGAGGTACCCGCCTAATGTGGCGAATGTGGAGAAGGATGTGATTGC TCCTTACAAGCATGTCGTTAAGAGCTATGTCGATGATACGTCGGAGTTCGATACCAGGCCGACTCTGCTCTACTTCCAAGGAGCTATCTACAGGAAGGAT GGTGGACTAGCAAGGCAGGAGTTGTTCTACCTACTCAAAGACGAAAAAGACGTACATTTCCAGTTCGGAAGCGTGAAGAAAGACGGGATACACAACGCAT CGAGAGGGATGCACTCATCGAAATTCTGCCTCAACATAGCAGGAGACACACCGTCCTCGAATCGCCTCTTCGACGCAATCGCCAGCCACTGCGTCCCTGT GATAATCAGCGACGAAATCGAGCTGCCCTACGAGGATGTCCTGGACTACTCGGAGTTCTGCATATTCGTCAAGACCTCCGACGCAGTCAGGGACAAGAAG TTCCTGATAAACTTCATCAGGAGCATCAAGAAGGAAGAGTGGACTAGGATGTGGAACAGACTGAAGGAAGTCGAAACTTTGTTCCGGTTTCAGTACCCTT CGAAAGAAGGGGATGCTGTTCAGATGATATGGCAGGCTGTAGCTAGGAAAGTTCCTGGTGTGAAGATGAAGATTCACAAGTCTAGGAGATACTCAAGGTT TGGCAATGGTGATGGTAATGCTAATGTTATTAAGCCTCGTTATAGTCGAGGCTCGTCGTCTAGGCATATACGTACGCCAAAGAACTTCTGGTGA
AA sequence Show only first row Show all	>Lus10005684 pacid=23168887 polypeptide=Lus10005684 locus=Lus10005684.g ID=Lus10005684.BGIv1.0 annot-version=v1.0 MALLLLHQKPTSYPSANSLPPNLLKKTRRNKHHLSFRFLPLFIKTSESKGLLTSESKVSIRKWRGDNTEQSILRCRQGRRRERGKKISPMGSSIARKLVF CMFPFISAAVMLSSWVFVVRSFSAGRPSFLDRAFLPAVTTLSAVETESTTAMPRPSRARAILVDREIAGRIEKNIVKVPKCSDGRKTRRQKQLKVFMYDM PPEFHFSLLEWKPEENGNVWPDVTAHIPGYPGGLNLQHSIEYWLTLDLLASEFPHIPRGSSAVRVRNSSDADVVFVPFFSSLSYNRYSKVDPHQKKSRNN LLQDKLVRYLTSQEEWKRSGGRDHLVMAHHPNSMLSARMKLWPAMFVLSDFGRYPPNVANVEKDVIAPYKHVVKSYVDDTSEFDTRPTLLYFQGAIYRKD GGLARQELFYLLKDEKDVHFQFGSVKKDGIHNASRGMHSSKFCLNIAGDTPSSNRLFDAIASHCVPVIISDEIELPYEDVLDYSEFCIFVKTSDAVRDKK FLINFIRSIKKEEWTRMWNRLKEVETLFRFQYPSKEGDAVQMIWQAVARKVPGVKMKIHKSRRYSRFGNGDGNANVIKPRYSRGSSSRHIRTPKNFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45400			exostosin family protein (.1)		Lus10005684 [exp]	0	1
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10013230 [exp]	2.6	0.8790
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10023417 [exp]	5.7	0.8561
AT3G44670			Disease resistance protein (TI...		Lus10037667 [exp]	6.5	0.8162
AT4G04980			unknown protein		Lus10018473 [exp]	9.8	0.7922
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10035802 [exp]	11.1	0.7980
					Lus10024189 [exp]	12.6	0.8591
AT4G22320			unknown protein		Lus10043179 [exp]	15.2	0.8554
					Lus10026090 [exp]	15.9	0.7812
AT4G38590		BGAL14	beta-galactosidase 14 (.1.2)		Lus10014125 [exp]	16.2	0.7793
					Lus10032429 [exp]	18.1	0.7665

Compare expression of checked genes

Lus10005684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.