Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33100 144 / 2e-41 MATE efflux family protein (.1) AT1G33110 142 / 1e-40 MATE efflux family protein (.1.2) AT1G33090 141 / 2e-40 MATE efflux family protein (.1) AT1G33080 133 / 3e-37 MATE efflux family protein (.1.2) AT1G61890 124 / 7e-34 MATE efflux family protein (.1) AT1G11670 120 / 9e-33 MATE efflux family protein (.1) AT4G21910 120 / 1e-32 MATE efflux family protein (.1.2.3.4) AT3G03620 118 / 7e-32 MATE efflux family protein (.1) AT5G17700 116 / 4e-31 MATE efflux family protein (.1) AT4G21903 115 / 1e-30 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003869 [exp] 166 / 9e-50 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10013626 [exp] 159 / 4e-48 AT1G33110 365 / 2e-123 MATE efflux family protein (.1.2) Lus10033596 [exp] 113 / 6e-30 AT3G59030 759 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Lus10002645 [exp] 112 / 1e-29 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 112 / 1e-29 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10017639 [exp] 111 / 2e-29 AT3G59030 755 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Lus10010035 [exp] 110 / 4e-29 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10001142 [exp] 110 / 7e-29 AT3G21690 712 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 109 / 3e-28 AT5G65380 651 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G069700 [exp] 148 / 5e-43 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.011G002900 [exp] 119 / 5e-32 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.013G069250 [exp] 116 / 3e-31 AT3G03620 491 / 6e-171 MATE efflux family protein (.1) Potri.011G002800 [exp] 115 / 1e-30 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002400 [exp] 114 / 4e-30 AT3G21690 636 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 113 / 5e-30 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 112 / 8e-30 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002600 [exp] 112 / 8e-30 AT3G21690 610 / 0.0 MATE efflux family protein (.1) Potri.013G069400 [exp] 111 / 2e-29 AT3G03620 527 / 0.0 MATE efflux family protein (.1) Potri.013G069600 [exp] 110 / 4e-29 AT3G03620 533 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10005685 pacid=23168881 polypeptide=Lus10005685 locus=Lus10005685.g ID=Lus10005685.BGIv1.0 annot-version=v1.0 ATGGGTTCATTATGTTACTATATGAACACTTCCTTGTTTCTTTGTGGTTGCAGCTTGATTCATAAAGCCAAGAGTTTGCATCATCAAGATCTTGGCAAGA TTGAGAAAAAGGTACGCAGGGGGGAAATTGCGTACCTGTTCAATGAGAGCCCCCAAGTGGTCGATGCAGTTGCTGACCTTTCACCATTACTGCCCTTCTC CATTCTCCTCAACAGCATACAGCCAGTTCTTTCTGGCGTTGCTATTGCCGCTGGATGGGAGAGCATTGTGGTATACGTCAACTTAGCCTCCTATTACCTT GTTGGGATCCCAGTTGGAGTTGTTCTTGGCTATGTCTTCGACCTCCAAATTAAAGATGTCTGGATAGGAATGCTGTTCGGGACACTCATTCAAACCATCA TTCTCATAGTGATCACCTCCAAAACCGACTGGGACAAACAGGTAAGAAAGCTGTAA
AA sequence Show only first row Show all	>Lus10005685 pacid=23168881 polypeptide=Lus10005685 locus=Lus10005685.g ID=Lus10005685.BGIv1.0 annot-version=v1.0 MGSLCYYMNTSLFLCGCSLIHKAKSLHHQDLGKIEKKVRRGEIAYLFNESPQVVDAVADLSPLLPFSILLNSIQPVLSGVAIAAGWESIVVYVNLASYYL VGIPVGVVLGYVFDLQIKDVWIGMLFGTLIQTIILIVITSKTDWDKQVRKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33100			MATE efflux family protein (.1...		Lus10005685 [exp]	0	1
AT2G20835			unknown protein		Lus10018561 [exp]	2.8	0.8946
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	5.4	0.9013
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023626 [exp]	7.7	0.8833
AT2G20835			unknown protein		Lus10039793 [exp]	8.9	0.8595
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	11.4	0.8912
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Lus10042111 [exp]	12.8	0.8837
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10018280 [exp]	13.0	0.8707
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10017735 [exp]	14.7	0.8842
AT3G60810			unknown protein		Lus10004025 [exp]	18.4	0.8562
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10031540 [exp]	18.7	0.8704

Compare expression of checked genes

Lus10005685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.