Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08680 385 / 2e-125 ZIGA4, AGD14 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) AT4G13350 187 / 4e-51 NIG NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) AT4G32630 177 / 1e-47 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) AT5G54310 79 / 2e-15 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 64 / 3e-11 AGD15 ARF-GAP domain 15 (.1) AT3G07940 64 / 2e-10 Calcium-dependent ARF-type GTPase activating protein family (.1) AT4G05330 61 / 1e-09 AGD13 ARF-GAP domain 13 (.1) AT4G21160 57 / 2e-08 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT3G53710 56 / 7e-08 AGD6 ARF-GAP domain 6 (.1.2) AT2G37550 54 / 2e-07 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020306 [exp] 930 / 0 AT1G08680 373 / 7e-122 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Lus10022113 [exp] 181 / 5e-48 AT4G32630 249 / 2e-72 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Lus10033090 [exp] 111 / 3e-25 AT4G13350 338 / 4e-108 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Lus10027249 [exp] 81 / 8e-17 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 82 / 5e-16 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 80 / 2e-15 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 79 / 3e-15 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10024165 [exp] 55 / 2e-07 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10039538 [exp] 54 / 2e-07 AT3G07940 490 / 4e-171 Calcium-dependent ARF-type GTPase activating protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G068300 [exp] 533 / 0 AT1G08680 499 / 2e-168 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Potri.018G076200 [exp] 219 / 6e-62 AT4G13350 371 / 3e-119 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Potri.006G246100 [exp] 200 / 1e-54 AT4G32630 224 / 1e-63 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.018G035000 [exp] 193 / 2e-52 AT4G32630 210 / 2e-58 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.011G127000 [exp] 83 / 2e-16 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 79 / 4e-15 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 77 / 1e-14 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 71 / 2e-13 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.004G035800 [exp] 70 / 2e-12 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G026400 [exp] 59 / 2e-09 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10005686 pacid=23168902 polypeptide=Lus10005686 locus=Lus10005686.g ID=Lus10005686.BGIv1.0 annot-version=v1.0 ATGGGAAGTAGGAAGGAAGAAGAGCGTAACGAGAAGATCATCAGAGGGCTGCTGAAGCTCCCTCCGAATCGTCGTTGCATCAATTGCAATTCCTTGGGTC CGCAGTATGTTTGCACCAACTTCTGGACTTTCGTCTGCATGACTTGTAGTGGCATACACCGCGAGTTCACTCATCGGGTGAAGTCGGTTTCCATGTCGAA GTTCACGTTCCAAGAAGTCGAAGCACTTCAAAACGGTGGTAATCAGCGTGCAAGGGAAATATATTTGAGAGAGTGGGACCAAGAAAGGAAGAGGTTGCCT GCTAGCAGTAATAATGATCGGGTGCGTGAATTCATAAAGCATGTATATGTCGATAAAAAGTATGCTGGGACGAAGACGGCTGATAAGCCTCCTAGGGACT TGCAGAGGATAGGAAGCTACGAAGACGAGAGCAGGCGGGCAAGTTCTTATCATTCATTTTCTCAAAGTCCTCCTTATGACTTCCAATATGAAGAAAGGCG TTATGGGAAACAAGGCGCAGTGCTTCGAAGACCTGGCTCAGATCGAGGCATTTCTGTCGGAAAGATGTCTAGTTTTATTTATAGTCCAACTCGATCAACT GATAGAACGTCAGAGGACAGGTTTGCAAATGAAGGATCTGTTTCTAGACTATCCGACTTCTCAGTTTCTAGTGGAGGCGATTTAGTTAGGCCCGGATATG GTTTTGAATCTCCAAATTTTCAAAAGGGAAGTGGAGGTAATAGTCCTTCCCCACAGACCCTAGGAAATGCTCCAGGGGAGGGTGTGCCGCATCAAATTGT ACGTTCATCTCCGGAGGCCGACTTTAGAAGGGAAAGCAACCAGATGGCACAACCACAGAGAACAATGTCTTTAGTAGGCAAAGGGACACCAGCCGTCAAT CCGTTATCTCATAGGTCCAACAGTTTGCCTACCCTATTCGATGATCTCCCAGAACCTGAGCAAGCCACTTCCCATGGAAACTTCGGATTTGCCAAGCCCC CAGCTCTCCCCCCATCAAACCATTCTGGAAATGCACCTATTGATCTGTTCCAATTACCCTCATCATCCGGTCCTCCCCTTGACTTTTTCAATGGATCTCA ATTACAGCCACCATCTAAAAGCATGGATAAACTTCCTCAAACTTTCCAGCCTTCCACATTGGATTTGTTTTCTGGGTTTGATCAGAATCAACCAGTTGCT ACTGCTGATAAAATCCCACCAGATCCGGTGATCCCTGAAAATGGAGGATGGGCTACTTTTGATAATATGCAGCCTGTACCTTCTACAGCAGGGACCAATA ATCCTGTACCTTCATTTACGGCTAATAGTGCCGGTCCGGCTCTGAATATGCAAGTGGAGTTTCATGCATTCGAAAATGTTGGTGCTGAGAAGACATTCTC TGTTTTGGATCCTTGGCATGCTGGCTTGCAGAATTCTGAGTTGCAAAGTAATCCAACTGCACAAACGTGGAATGCCTTTGATAATTCTGCAGTGCCCTTC CCTATTGATCACATGCAGCAATTTAGTGAACCAAAGCTTCCTGCACACAATCCTTTGACGGCTCTTGATATGCATAAAGACAGTACAAGAAGCGATACAT ATTTCCAACCCTCGGCTCCTAACAGCTCATCTCATCCAGTGCATCCTATGATGGAGCAAACAGTCTCTCAGGCACCTCGGAGCAGATCAACCAACCCATT TGAGCTTTCATATGATTCGGATTTAGAACCAGACAAGATGTTCTTGGACATGGCTTCTCTGCAATCTGCACTGCCGAATGATCATTTATCATCATCCTTC ACAATGGATGCATCTCATTCATGGTTCCCCCAAGACCCTGTCATGAATTACATGCCTAGCGCTGCTTTGCAAGGTGGCTTACCGTACGCTCCTGGATCGG CTCCAAGTCCTCCATTAGGGTCCATGCCCGCACAAGGTCCAGTCGCCTCCATCGGAGGAAACCCATTTGCGTAG
AA sequence Show only first row Show all	>Lus10005686 pacid=23168902 polypeptide=Lus10005686 locus=Lus10005686.g ID=Lus10005686.BGIv1.0 annot-version=v1.0 MGSRKEEERNEKIIRGLLKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTFQEVEALQNGGNQRAREIYLREWDQERKRLP ASSNNDRVREFIKHVYVDKKYAGTKTADKPPRDLQRIGSYEDESRRASSYHSFSQSPPYDFQYEERRYGKQGAVLRRPGSDRGISVGKMSSFIYSPTRST DRTSEDRFANEGSVSRLSDFSVSSGGDLVRPGYGFESPNFQKGSGGNSPSPQTLGNAPGEGVPHQIVRSSPEADFRRESNQMAQPQRTMSLVGKGTPAVN PLSHRSNSLPTLFDDLPEPEQATSHGNFGFAKPPALPPSNHSGNAPIDLFQLPSSSGPPLDFFNGSQLQPPSKSMDKLPQTFQPSTLDLFSGFDQNQPVA TADKIPPDPVIPENGGWATFDNMQPVPSTAGTNNPVPSFTANSAGPALNMQVEFHAFENVGAEKTFSVLDPWHAGLQNSELQSNPTAQTWNAFDNSAVPF PIDHMQQFSEPKLPAHNPLTALDMHKDSTRSDTYFQPSAPNSSSHPVHPMMEQTVSQAPRSRSTNPFELSYDSDLEPDKMFLDMASLQSALPNDHLSSSF TMDASHSWFPQDPVMNYMPSAALQGGLPYAPGSAPSPPLGSMPAQGPVASIGGNPFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10005686 [exp]	0	1
AT4G23460			Adaptin family protein (.1)		Lus10017508 [exp]	2.6	0.7756
AT5G35560			DENN (AEX-3) domain-containing...		Lus10017173 [exp]	9.2	0.7646
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	10.7	0.7571
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10017983 [exp]	11.7	0.7750
AT4G02480			AAA-type ATPase family protein...		Lus10010282 [exp]	14.3	0.7604
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10017845 [exp]	16.5	0.7309
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10025239 [exp]	16.6	0.7365
AT4G31200			SWAP (Suppressor-of-White-APri...		Lus10008260 [exp]	21.4	0.6501
AT1G11060			WAPL (Wings apart-like protein...		Lus10011196 [exp]	21.6	0.6876
AT3G22430			unknown protein		Lus10021918 [exp]	23.9	0.6727

Compare expression of checked genes

Lus10005686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.