Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35220 722 / 0 EGY1 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) AT5G35210 226 / 2e-63 metalloendopeptidases;zinc ion binding;DNA binding (.1.2) AT5G05740 144 / 4e-37 ATEGY2 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) AT1G17870 98 / 3e-21 ATEGY3 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020304 [exp] 1023 / 0 AT5G35220 781 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) Lus10011873 [exp] 143 / 1e-36 AT5G05740 648 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10022806 [exp] 132 / 5e-32 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10006140 [exp] 100 / 6e-22 AT1G17870 801 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G064700 [exp] 778 / 0 AT5G35220 766 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) Potri.008G066500 [exp] 139 / 2e-35 AT5G05740 610 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Potri.001G289700 [exp] 108 / 8e-25 AT1G17870 755 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF02163 [flax] [poplar] Peptidase_M50 Peptidase family M50
Representative CDS sequence Show only first row Show all	>Lus10005688 pacid=23168914 polypeptide=Lus10005688 locus=Lus10005688.g ID=Lus10005688.BGIv1.0 annot-version=v1.0 ATGGGGACTCTGGCGAGCTACAGCTTCAACACGATGAGCTTCCGGCACCGTACGGGAGCCATGGATGAAGGTTTCCGTGGTGGCCGGAAGAAACTGTCCG GGTTCAGCTCTTGCTACCTCTGCGGCGGGAGGATGCTTAGTCGTCATCAGATGGAAAATTACACTTTCAGGAGGAAGAAAGTGAATTGCTTTAACGATTC GGATGATGGTAAGGGTGGCAAGGAAGTGGAGAATGGTGAAATGGGTAGTAGTAGTAGTAGTAGGAAAGAATCTGGGTTAGCTACAGCTGAGGAGAATGAG AATGAGTTTGGTTCTGATAACGGTGACAATTCTGTTTCATCGAGGCCACCACCTACCATATCACCACTCGGACCAGTTTACAGTAATTTCCAAGTGGACT CTTTCAGATTGCTGGAGCTTCTCGGACCGGAGAAGGTCGATCCAGACGATGTTAAGCTTATAAAGGACAAGCTTTTCGGCTACTCAACGTTCTGGGTTAC AAAGGAAGAAACTTTCGGAGACCTCGGTGAAGGCATTCTCTTCCTGGGGAATTTGAGAGGGAAGAGGGAAGACGTTTTCGCCATGTTCCAAAACCAGCTA GCTGAGGTAACTGGTGACAAGTATAACCTTTTCATGGTGGAAGAACCAAACTCGGAAGAACCTGATCCTCGTGGTGGCCCACGAGTTAGTTTCGGTTTGT TAAGGAAGGAGGTTTCGGAGCCGGGGCCGACGACTCTTTGGCAATATGTGATTGCTCTACTGTTGTTCGTTCTAACAGTTGGTTCTTCTGTGGAGTTAGG AATTGCATCTCAGATCAATCGTCTTCCTCCGGAAGTGGTGAAGTATTTTACAGATCCGAGCGCTGTTGAACCGCCAGATATGCAGCTGCTTTTCCCATTT GTGGATTCTGCTTTGCCGTTAGCCTACGGAATCTTGGGGATTCTGCTATTTCATGAACTAGGGCATTTTATTGCTGCTTTCCCTAAAAAGGTGAAACTCA GCATTCCGTTCTTCATCCCAAACATCACTCTTGGAAGCTTTGGTGCAATAACTCAGTTCAAATCTATACTTCCTGATCGGAGTACAAAAGTTGACATTTC GTTAGCTGGTCCATTCGCTGGAGCTACACTCTCGTTCTCCATGTTCATCGTCGGCCTTCTACTTTCGTCGAATCCAGCAGCTACAGAGGACTTGATACAG GTTCCCAGTATGCTGTTTCAGGGTTCTTTACTTCTCGGGCTAATCAGCAGAGTCACCCTCGGTTACACAGCAATGCATGCTGCAACAGTTTCCATTCATC CTCTGGTGATTGCAGGCTGGTGTGGCTTGACGACAACAGCTTTCAATCTGCTGCCAGTAGGAAGCCTTGATGGCGGGAGAGCGGTACAGGGTGCTTTCGG GAAAGGTGCACTCATTGGGTTCGGGTTGACAACATACACATTGCTTGGTTTAGGATTGCTCGGTGGACCGCTGTCGCTCCCATGGGGACTATACGTCCTG ATATGTCAGAGGGCTCCCGAGAAACCGTGTTTGAACGACGTGACAGAGGTTGGGACGTGGAGACAGGCGGCTGTGATGACGGCCATCTTCATGGTGGTGC TGACCCTGGTCCCGGTCTGGGACCAGCTCGCGGAGGAGCTCGGTATAGGTCTGGTTACTACATTTTGA
AA sequence Show only first row Show all	>Lus10005688 pacid=23168914 polypeptide=Lus10005688 locus=Lus10005688.g ID=Lus10005688.BGIv1.0 annot-version=v1.0 MGTLASYSFNTMSFRHRTGAMDEGFRGGRKKLSGFSSCYLCGGRMLSRHQMENYTFRRKKVNCFNDSDDGKGGKEVENGEMGSSSSSRKESGLATAEENE NEFGSDNGDNSVSSRPPPTISPLGPVYSNFQVDSFRLLELLGPEKVDPDDVKLIKDKLFGYSTFWVTKEETFGDLGEGILFLGNLRGKREDVFAMFQNQL AEVTGDKYNLFMVEEPNSEEPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIALLLFVLTVGSSVELGIASQINRLPPEVVKYFTDPSAVEPPDMQLLFPF VDSALPLAYGILGILLFHELGHFIAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPFAGATLSFSMFIVGLLLSSNPAATEDLIQ VPSMLFQGSLLLGLISRVTLGYTAMHAATVSIHPLVIAGWCGLTTTAFNLLPVGSLDGGRAVQGAFGKGALIGFGLTTYTLLGLGLLGGPLSLPWGLYVL ICQRAPEKPCLNDVTEVGTWRQAAVMTAIFMVVLTLVPVWDQLAEELGIGLVTTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10005688 [exp]	0	1
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10018075 [exp]	2.4	0.8484
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10020304 [exp]	3.3	0.8897
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Lus10018051 [exp]	5.3	0.8464
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10038031 [exp]	24.4	0.8390
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10029444 [exp]	25.3	0.8468
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10013856 [exp]	28.4	0.8389
AT5G14260			Rubisco methyltransferase fami...		Lus10041585 [exp]	32.2	0.8388
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10018210 [exp]	32.8	0.7976
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10004326 [exp]	34.5	0.8084
AT5G42310			Pentatricopeptide repeat (PPR-...		Lus10016009 [exp]	36.2	0.8198

Compare expression of checked genes

Lus10005688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.