Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03770 769 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G14210 422 / 2e-136 Leucine-rich repeat protein kinase family protein (.1) AT1G14390 399 / 6e-128 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 388 / 9e-124 Leucine-rich repeat protein kinase family protein (.1) AT5G63410 307 / 1e-93 Leucine-rich repeat protein kinase family protein (.1) AT5G39000 164 / 1e-41 Malectin/receptor-like protein kinase family protein (.1) AT5G38990 162 / 3e-41 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 161 / 8e-41 THE1 THESEUS1, protein kinase family protein (.1) AT4G39110 160 / 2e-40 Malectin/receptor-like protein kinase family protein (.1) AT2G01820 158 / 9e-40 CYCJ18 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020303 [exp] 1266 / 0 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033407 [exp] 582 / 0 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 582 / 0 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10032058 [exp] 460 / 8e-151 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035225 [exp] 454 / 6e-149 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 442 / 9e-144 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030785 [exp] 428 / 3e-139 AT1G14390 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 396 / 2e-126 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013262 [exp] 385 / 6e-123 AT1G14390 632 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G039000 [exp] 910 / 0 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 865 / 0 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G014300 [exp] 654 / 0 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G147700 [exp] 479 / 7e-159 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G333300 [exp] 440 / 2e-143 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 424 / 3e-137 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G095600 [exp] 408 / 4e-131 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G156200 [exp] 182 / 3e-47 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.009G120400 [exp] 169 / 2e-43 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.004G095700 [exp] 161 / 2e-41 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10005689 pacid=23168916 polypeptide=Lus10005689 locus=Lus10005689.g ID=Lus10005689.BGIv1.0 annot-version=v1.0 ATGGAGCTCCACATTTCTGCTGCCATACTGATCATCTTGCTCTCGGTTCATCTCGCAAACGGACTCCACCAGTCCTCCGAGTTCCAAACCCTCATCAGGA TTCAGAAGCTTCTCAACTACCCATCTGTCTTACAAAGCTGGAATTCCACCACTGATTTCTGCAGCAACGCGGATCGCAATACTCCGTACGCAACCGTCGT CTGCTACCAGAACAGCATAACTCAGCTCCACATCATCGGCAACAAAGGGGGAAGTTCATCCAGACCATCTCTGCTCCCCAAGAACTTCTCCATTGAATCA TTTGTCACAACTCTGTCCACCCTCCCCAATCTGAAGGTACTCACACTGTCTTCGCTCGGCTTGTGGGGCCCGCTGCCTGGCGAAATCGGACGTTTGTCGT CGTTGGAGATACTTAATGTCAGCTCTAATTTTCTCTACGATGCTATTCCTGGAGAGCTGAGATTACTCTCGAGCCTCCAGTCGCTTGCGCTCGACGACAA CATGTTTTCGGGGATTATGCCGGACTGGATCGGTTCTAAACTCCCTGGCCTGGCTGTTCTTAGCATGAGGAAGAACATGTTCAATGGTACATTACCTGAT TCGCTTGGTAATTTGGAGAATCTCAGAGTTCTTGCGCTCTCACACAACTACTTCCACGGAGAAGTCCCCAGTTTCAGCCGGCTGACGAACCTGCAAGTGC TCGATCTCGAAGACAACGATTTCGGGACCGAGTTCCCCAAGCTGGGGAACAAGCTGGTCACTTTGGTACTGAGCAAGAACAAGTTCAGAGACGGACTCCC GTCAGAAATCAGCTCCTTCCGCCAGCTGGCAAAACTCGATGTCTCCGGAAACAATTTCGTGGGACCGTTTCCACCGTCGTTGCTGGCATTGCCTTCCATT GCCTACTTGAACATTGCAGGAAACAAGCTAACCGGAAAGATGTTTGAGAATCAGTCTTGTAGCACTCAACTTGAGTTTGCTGACTTGTCATCCAACTTTC TGACTGGACATCTGCCTACGTGTGTTCACCAGAAAACTGTCCTGGCTAATGGGAACTGCCTGGAGGCGGGAGATAACGATGAAGGTCGTCAGAATCCGGT TTCGTTCTGTCAAAACGAAGCGTTGGCGGTTGGTGTTATCCCGGCGATGAAGAGTGGTGGGAAAGGAAGCTCTGAGAATGCAGTAGTGATTGCATTGGGT GTGATTGGAGGAGTTGTTGGAGGGATTGCACTTGCTGCTTTGGGTTTCTTGCTGGTCAAGAAAGTGAATTGTAGCTCTGGGATCAGACTCGAGAGACATT CGAAGACGAGGACGATTTTCGAGAATGCGTCAGTAACTAGTTATCCATCCCAGTTGCTCCAAGATGCAAGGTTAATATCTCAAACGATGAAGCTAGGAAC ACTTGGAGTACCAGCTTACCGAAGCTTTTCGTTGGAAGAGATCGAAGATGCGACGAACAACTTCGAATCGTCTGCTTTCATTGGTGAAAGCTCTCAAGGA CAGATGTACAGAGGAAAACTGAAGGATGGTTCTTTCGTCGCGATCAGATGCATGAAGATGAAAAAATCCCACAGCACTCAGACATTCACTCGCCATATAG AGCTCATCTCAAAGCTCAGGCACAGACATCTAGTCAGTGCCCTCGGACACTGCTTCGAGTGCTACTTGGACGACTCGACTGTCAGCAGAGTGTTCCTCGT GTTCGAACATGTACAGAACGCCAAGAATCTAAGGGGCTGGGTGACAGAGAGACATGGCAGGCAGAAGCTCAACTGGACTCAAAGGCTAACAGCAGCGATC GGAGTGGCGAAAGGAATGCAGTTTCTTCATACAGGGATCGTTCCAGGCGTATGTGGAAACAATCTGAAGATAACAGACGTTCTACTCGATCAGAACCTTG TTTCGAAAATCAGCAGCTATAACTTGCCCTTACTAGCTGATCTCACTAGACAGATTGGACACAGAAATTCTTCAGCTGCTGATTCGAAGGATCCTGCAAG AACAAGCCAGGAAGCAAAAGCTGATGTTCACGACTTCGGCATCATACTGCTGGAGATCATCGTGGGGAGACCGTTGCGATCTCGAATCGAAGTCGATGCT CTAATAGACCAACTGCGGGCTGTGGTAGCGTTAGACGGAGCTGCGAGGAGGGGGATGGTGGATGGAGACGTTCGAAAGGGATGTTCAAACCAGTCGGTGA AGACGGCGATGGAGATCTGCGTGAGGTGTCTCAGCAAGAACCCTGGAGAGAGGCCATCTTTGGAGGACGTGCTGTGGAACTTGCAGTTCGCCGCTCAGGC GCAGAGCGGCGAAGTGTCTCCTTCAGCCCCATTCAACGTTATCTGA
AA sequence Show only first row Show all	>Lus10005689 pacid=23168916 polypeptide=Lus10005689 locus=Lus10005689.g ID=Lus10005689.BGIv1.0 annot-version=v1.0 MELHISAAILIILLSVHLANGLHQSSEFQTLIRIQKLLNYPSVLQSWNSTTDFCSNADRNTPYATVVCYQNSITQLHIIGNKGGSSSRPSLLPKNFSIES FVTTLSTLPNLKVLTLSSLGLWGPLPGEIGRLSSLEILNVSSNFLYDAIPGELRLLSSLQSLALDDNMFSGIMPDWIGSKLPGLAVLSMRKNMFNGTLPD SLGNLENLRVLALSHNYFHGEVPSFSRLTNLQVLDLEDNDFGTEFPKLGNKLVTLVLSKNKFRDGLPSEISSFRQLAKLDVSGNNFVGPFPPSLLALPSI AYLNIAGNKLTGKMFENQSCSTQLEFADLSSNFLTGHLPTCVHQKTVLANGNCLEAGDNDEGRQNPVSFCQNEALAVGVIPAMKSGGKGSSENAVVIALG VIGGVVGGIALAALGFLLVKKVNCSSGIRLERHSKTRTIFENASVTSYPSQLLQDARLISQTMKLGTLGVPAYRSFSLEEIEDATNNFESSAFIGESSQG QMYRGKLKDGSFVAIRCMKMKKSHSTQTFTRHIELISKLRHRHLVSALGHCFECYLDDSTVSRVFLVFEHVQNAKNLRGWVTERHGRQKLNWTQRLTAAI GVAKGMQFLHTGIVPGVCGNNLKITDVLLDQNLVSKISSYNLPLLADLTRQIGHRNSSAADSKDPARTSQEAKADVHDFGIILLEIIVGRPLRSRIEVDA LIDQLRAVVALDGAARRGMVDGDVRKGCSNQSVKTAMEICVRCLSKNPGERPSLEDVLWNLQFAAQAQSGEVSPSAPFNVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03770			Leucine-rich repeat protein ki...		Lus10005689 [exp]	0	1
AT3G03770			Leucine-rich repeat protein ki...		Lus10020303 [exp]	1.0	0.9151
AT3G44670			Disease resistance protein (TI...		Lus10028343 [exp]	2.0	0.8706
AT1G80530			Major facilitator superfamily ...		Lus10017971 [exp]	5.5	0.8848
AT5G63180			Pectin lyase-like superfamily ...		Lus10013667 [exp]	6.2	0.8485
AT5G63180			Pectin lyase-like superfamily ...		Lus10013668 [exp]	6.3	0.8562
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	7.1	0.8745
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	7.4	0.8705
AT5G63180			Pectin lyase-like superfamily ...		Lus10033037 [exp]	12.3	0.8220
AT1G80530			Major facilitator superfamily ...		Lus10041962 [exp]	13.6	0.8687
AT5G45850			Protein of unknown function (D...		Lus10015280 [exp]	13.7	0.8542

Compare expression of checked genes

Lus10005689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.