Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35910 771 / 0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) AT1G54440 592 / 0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT2G32415 209 / 4e-56 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT2G25910 50 / 5e-06 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (.1.2) AT5G24340 44 / 0.0004 3'-5' exonuclease domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039170 [exp] 1470 / 0 AT5G35910 828 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10020300 [exp] 1022 / 0 AT5G35910 477 / 1e-157 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10020293 [exp] 885 / 0 AT5G35910 691 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10015114 [exp] 205 / 1e-54 AT2G32415 1089 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10031563 [exp] 201 / 7e-53 AT2G32415 1039 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10020301 [exp] 80 / 1e-17 AT5G35910 61 / 6e-12 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G062800 [exp] 908 / 0 AT5G35910 791 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.019G038701 [exp] 907 / 0 AT5G35910 846 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.002G229000 [exp] 201 / 3e-53 AT2G32415 1050 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Potri.015G009500 [exp] 49 / 2e-05 AT5G24340 679 / 0.0 3'-5' exonuclease domain-containing protein (.1) Potri.005G020000 [exp] 44 / 0.0005 AT1G56310 655 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [flax] [poplar] HRDC-like PF00570 [flax] [poplar] HRDC HRDC domain CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease CL0219 [flax] [poplar] PF08066 [flax] [poplar] PMC2NT PMC2NT (NUC016) domain
Representative CDS sequence Show only first row Show all	>Lus10005691 pacid=23168874 polypeptide=Lus10005691 locus=Lus10005691.g ID=Lus10005691.BGIv1.0 annot-version=v1.0 ATGGACATCGATCAACCGAATCAACCACCACAGTCCCAATCCCAAACCCTAACCACATTAACCACCGGGCCTCTCTCCTCATCACTCTCATCTCTCGCCG CATCTTCCCGCGCATTCCCTTCCAACAAGGACTTCCACTTCTACAACAACTTCGAGGAGTTCAAACACCCCGTGAACCGAATCGCGTCCAAGTCTCAGTC CCTCCTCGGTTCAATCGGGGTCTCGGGGTCCGTCTTCAAGCAGAGTTACACATTCCCAACCGACATTGACTGCGACGAGGCGTCCGATTGGCTCGTCAAC GTCAACGACGAGGTGCTTGAGCGGTTCGACTCGTCGGTTGACGAGTTTGAGACGGCGCGGAAGGGGCAGGAGGAGAGTAGCGCTAAGGGGACGATGGATG AAGACGGGTTTCAGACGGTTTACGGGAGGGATAATAAGAAGAAGAGTAACGTCTGGATTAATCCGAATAGCGGATTAGCTGCGGCGGGGAGCTCGGGTGG TGAGATGGGAGTTAAGGTTGCTGATAAGAAGGGGAATGTTGGCGGGAAGGCGAAGGTTCCGTTTCATATTCCGTCGATTAGGAGGCCGCAGGAAGAGTAT AGTATCTTGGTGAATAATTCGAGCCAGGCGTTTGAGCATGTCTGGTTGGAGAAGAGTGCTGATGGGACGCGGTTTGTTCATCCCTTGGAAAAGCTTTCTG TTTTGGACTTTGTGGACAAAGATGCTGGTGATATTGAACCGGTGGTTCCACCTGCGATAGACAGTACCCCATTCAAGCTCGTAGAGGATGTCAAGGATTT GAAGGAGATGGCAGCTAAACTGCGTGCTGTCAATGAATTTGCGGTTGATTTGGAACACAATCAATATCGTTCTTTTCAAGGATTAGCATGCCTTATGCAA ATTTCAACAAGAACTGAGGATTTCATTGTTGACACTTTAAAGCTCCGAATACACGTTGGTCCTTATCTCAGGGAACTTTTCAAGGATCCAACCAAGAAAA AGGTCCTGCATGGAGCAAATTCAGACATATTGTGGCTTCAAAAGGACTTTGGAATATATGTGTGCAATATGTTTGATACAGGACAGGCCTCACGAGTACT GAAAATGGAGAGGAACAGTTTGGAGCATCTTTTGCATCATTTTTGCGGAGTTTTTGCTAACAAAGAATACCAGAATGCAGATTGGAGACTACGTCCTCTC CCTGTTGAGATGGTTAGATATGCTAGAGAAGACACCCATTATCTGCTATACATCTATGATGTAATGAGAGGCTTGTTGCATTCATTGCCTAAAGAAACTG AAAGTTCTGATACGCCACTGGTGGAGGTGTACAAACGGAGTAATGATATTTGCATGCAGCTATATGAGAAGGATCTTCTTATGGAAAATTCATATATGCA TATGTATGGGTTGCCAAGTGCTAACTTCAGTGCTCATCAGCTTGCGATTGTTTCAGGCCTCTATGAATGGAGAGATGCTATAGCCCGTACAGAAGATGAG AGTACAGGTTATATATTACCAAACAAAGTTCTGCTTGAAATCGCCAAGCAGATGCCTGTAACAACCAGCAAGTTGCGTCGCGTACTCAAATTGAATCACC AGTATATTGAGCGGCATCTCAGTTCTGTCGTTCAAGTTGTTCGACATCAAATGCAAAATGCTGCTGCATTTGAAACTGCTGTTCAGCAATTGAAGGAAAT GGCCTTTGAAATGCAAGCGAGAGTTCCATTGACGAGATTCTGTTTTCTTGTGAAGGCCTCGCGACGAGATAACGTTGAAGCAAATGATGATTTGAAGGTT GTTGATACACAAACTGCCGCTGCCATAGAAGCTCCAAATGTTGTAGCACAAGAAAACATGCCAGTCAGTTCTTCACAGGCTGAGAAGAAACATTTGGGTT GTGAAACCAATGTCAATCATGTTCATGAAAATGGGAAAACAGAGTCTTCTACATCCAAGAACCGGAGTGCCGACACGTCTCCTGCTGCAAAGGTTACAGG AGCTACTGTTCAGGTGCAAAAGAAGCAAGGCGGCATCTTCGGATCAATGCTTGGAAATGCAGTACTGAAGAAGCGAGCTGATACAGATAATAAGGATAAG AGAGACACGACGTTGGAAAAGATCAAATCATCGGTCAGTCTTCCATTCCACACGTTTGCAGGAGGAAACGAGCAACAATCAAAACCAGCCCTGGAAGAAG CGGCAGCTAGGATTTCGCTAGATGCACATCCTGAAAAATCTCCAGCTGCAAAGGACATCATAATGTTGGACTCGGAGTCGAGCGATGAAGAACCGGATGA TTCAGAAATGAAGGAATCAGTGGAGTCTCCATCCAAAGGAGACGATGAAACTGAACCGGTTACTCTATCCGATCTGTCCTCGAGCTTCGACAAGTGCTGC CGGTCTATAGAGAAGAAGAATGGAGTTGATAAGTCTACTCAGGAATCAAACGATGTGCCCCAGTTGAAGCCATTTGATTACGCTGCTGCGGCCGAAAAGC TGCTGAAGTTTGAGAAGGAGCCCAAGAAACCAGAAGTTGCCGTCGATGGGAAGAAATCGTCGTCCGTCGATCAGTCGTGTAAGAAGAGAAATTCGGCTGG GGGTGGAAGCGTTGAGAAGGACGACGATGGGGATGAATTTCGACCGGGTAGAAGGCGGCAGGCTTTTCCGGCCAGCGGCAACCGTAGCTTAAGCTACCGT TAA
AA sequence Show only first row Show all	>Lus10005691 pacid=23168874 polypeptide=Lus10005691 locus=Lus10005691.g ID=Lus10005691.BGIv1.0 annot-version=v1.0 MDIDQPNQPPQSQSQTLTTLTTGPLSSSLSSLAASSRAFPSNKDFHFYNNFEEFKHPVNRIASKSQSLLGSIGVSGSVFKQSYTFPTDIDCDEASDWLVN VNDEVLERFDSSVDEFETARKGQEESSAKGTMDEDGFQTVYGRDNKKKSNVWINPNSGLAAAGSSGGEMGVKVADKKGNVGGKAKVPFHIPSIRRPQEEY SILVNNSSQAFEHVWLEKSADGTRFVHPLEKLSVLDFVDKDAGDIEPVVPPAIDSTPFKLVEDVKDLKEMAAKLRAVNEFAVDLEHNQYRSFQGLACLMQ ISTRTEDFIVDTLKLRIHVGPYLRELFKDPTKKKVLHGANSDILWLQKDFGIYVCNMFDTGQASRVLKMERNSLEHLLHHFCGVFANKEYQNADWRLRPL PVEMVRYAREDTHYLLYIYDVMRGLLHSLPKETESSDTPLVEVYKRSNDICMQLYEKDLLMENSYMHMYGLPSANFSAHQLAIVSGLYEWRDAIARTEDE STGYILPNKVLLEIAKQMPVTTSKLRRVLKLNHQYIERHLSSVVQVVRHQMQNAAAFETAVQQLKEMAFEMQARVPLTRFCFLVKASRRDNVEANDDLKV VDTQTAAAIEAPNVVAQENMPVSSSQAEKKHLGCETNVNHVHENGKTESSTSKNRSADTSPAAKVTGATVQVQKKQGGIFGSMLGNAVLKKRADTDNKDK RDTTLEKIKSSVSLPFHTFAGGNEQQSKPALEEAAARISLDAHPEKSPAAKDIIMLDSESSDEEPDDSEMKESVESPSKGDDETEPVTLSDLSSSFDKCC RSIEKKNGVDKSTQESNDVPQLKPFDYAAAAEKLLKFEKEPKKPEVAVDGKKSSSVDQSCKKRNSAGGGSVEKDDDGDEFRPGRRRQAFPASGNRSLSYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	0	1
AT3G25430			Polynucleotidyl transferase, r...		Lus10009563 [exp]	1.4	0.9601
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	1.4	0.9650
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10042031 [exp]	3.2	0.9567
AT3G09720			P-loop containing nucleoside t...		Lus10013644 [exp]	3.5	0.9575
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10021402 [exp]	4.2	0.9530
AT5G01660			unknown protein		Lus10012220 [exp]	4.5	0.9444
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031212 [exp]	5.5	0.9492
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	5.7	0.9591
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10030171 [exp]	6.3	0.9517
AT1G69070			unknown protein		Lus10036815 [exp]	6.5	0.9442

Compare expression of checked genes

Lus10005691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.