Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26790 470 / 2e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G13800 412 / 3e-131 FAC19 embryonic factor 19, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74580 223 / 4e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 218 / 2e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 210 / 1e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 211 / 2e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G12100 213 / 4e-58 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63130 208 / 7e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 210 / 1e-57 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G62910 208 / 1e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020299 [exp] 817 / 0 AT2G26790 251 / 2e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020298 [exp] 689 / 0 AT2G26790 208 / 1e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020294 [exp] 558 / 0 AT2G26790 207 / 9e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020295 [exp] 313 / 2e-102 AT2G26790 74 / 7e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000909 [exp] 261 / 1e-75 AT1G74580 270 / 3e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004570 [exp] 247 / 4e-70 AT5G59900 290 / 9e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 226 / 6e-64 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10008185 [exp] 228 / 9e-63 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 224 / 3e-62 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G066600 [exp] 526 / 3e-176 AT2G26790 521 / 4e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G139300 [exp] 272 / 7e-80 AT5G01110 275 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 248 / 2e-70 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G276500 [exp] 238 / 1e-67 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 233 / 3e-66 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G069600 [exp] 230 / 6e-65 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 229 / 1e-64 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G249800 [exp] 229 / 7e-64 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G098400 [exp] 225 / 1e-62 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G123600 [exp] 218 / 2e-59 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10005692 pacid=23168899 polypeptide=Lus10005692 locus=Lus10005692.g ID=Lus10005692.BGIv1.0 annot-version=v1.0 ATGTGGTTATCGGCGGCTGGTAAGTCCATCTTCTTCTCATATACTCGCGTCAGACAGGTTAAGCTCAAAAGATTCTACGCTGGTGCTCCTGCGCTTTACT TCGGCAATCCGAATTTGTACGAGCCAACTCAAGCTGCCGGTAATTGGCTGGAGCTGAATTGCTCCATAGTCGTCGATCACCTTCACGAACTGAGAAAGGA ACCTTTCCTCGCACTTTCTTACTTTAAACAGGTGAAGGGAGGTGGGTTTCTTCACGATGTTTCAACTTATGCCGCCATGATTAAGATACTGTGTTTCTGG AGTTTGGACAGAAAACTGGATTCCATGCTCGACGAGATTGCTCAAAATCGAACGGAACTCGGTTTCGAGCTTGTCGATTTGCTGCAGGTTCTATCCGATG ATGGCTGTGATGCTGTTTCAAAAGTTTTGGATGCGTTGGTTAAACGTCTTGCATTGCTTGAGATGTTCGATGAGGCTCAGGATGTTCTTATACATGTGAA AGACTTTGGGGTTATCCCGAGCATTTTCACAGTTAATTACCTTATGAACCGTTTGATCGATTCGAACAGGGCTGATGCTGCAGTGGCGATTTATCTGCAG TTAGAGACTTGCTTCGGATTGAAACCGAATGATTACACTTTCGGCATTGTTGTCAAGGCTTTGTGTAAGAAAGGTAGGTTGGAAGAAGCAGAGACTCTAC TCGGGGCAATGGTAGAGAACGGGATGACTCCGACTGCTTTCCTTATCTCTACTTTTATCGAAGGGCTATGCGATCATCATAGCCCCTTATTGGGGTATAA AGCTCTTCAGAGCTTTATCGAAGCTAAGATTCCTGTTGATGCATACTCGTTTACATTGCTGATTCGAGGATTCTGTAACGTCAATAAACTAGACGAGGCT AAGGAGGTACTTGTCGAGATGAAAAGGCTCAGGTTCGGTCCCGATGTGTATGCTTATGGTCCCGTGATTCACAGGCTATGCAAGATCGGGAAATTACTCG AAGCGTTGAGTATTCACGATGAGATGCTGTCGAATGGAGTGAAGACGAATTGCGAAGTGGTCAGCTCGATTCTTCAAGGGCTGTCTAATGCAGGCATGGT TTCAAAAGTTTCGAATCTGTTCAAGACCTGTAAAGATAACGGTATGTACCTTGATAAGGTTTGTTATAATATAGTAATGAAGTCCTTCTGCACGTTAGGT GATGTGGAATCGGCTACCGGTTTACTAACCGAGATGAAAGAGAAGCGTATGGTTCCCGATCTCGTTAACTACACGACGTTGATCGATGGTTACTGTCACG AAGGTAAACTCCACGAGGCCACGAAGTTTTTCGAAGAAATGAAGGACAACGGGATTGAACCCGATATTATCGTTTATAATGTACTTGTTTCTGGCTTCTC CAGATTTGGTCATACAGCGAGAATCGAAAGGCTTTTAGCCTACATGACGGATCACGGTATTGAACCTACAAACGATACGTACGGTATCATCATCGATGGC CTATGCAATGCAGGGAAATTGGAAGACGCTGAAGCGTTCTTCTCCGAGCGGATTAAAGAGAAAGATCGAGGATTGGATCTCTGTAACGCCATGGTTAACG GCTACTGCTGTATGAAAAGCGTCGAAAAAGCGTTTAGACTGTTTGTTTCTGTGTCGCAACAGGGGTATATACTAAAGAAGAGTACTTGTTTGAAGCTTAT TTCCAGTTTGGAATACGATATGGCGAAATACGTCCAGCTAGCGGAGACGATGCTAAATCTAGAAGCGGATTATTCGTGTATGTTATGCAGCAGGATCATC GGAAAGCTTTCTCGTGCCGGAGAAATGGAAAAGGCCAGATACGTACTGCATCTTCTCGATCGGAGAGAGATGAGCTCCGATCTGGTGGCGTACACGATGA TGATACAGGGCTATTGCAGGGTAAATCAGCCGGAAGAGGGCTTCAAGGTTCTCGACGAAATGAAGAAACGAGGGATCGAACCCGATATTGTGACTTTCAC GGTTTTGCTCGACGGGGCGTTGAAGAATTCTGACGGCAGCAGAAGGAAACAGGAGGTGGTTACGAAAGTTCGCGACGAGATGGAGAGAACTAACGTGGAG CCGGATGCTGTTCATTACACTGTTCTGATAAACAGAAGCGGGAGAGCGAATAATTTGCAGGAAGCTAAAGAGCTTTTTAAGCAGATGATTGATAGAGGGG TGGAACCTGATACTGTTGCATATACAGCTCTGTTATGCGGATACTACCGTGCTGGAGATATGGAGGGTGCTGGAGTTGTTCTTGATGAGATTTCGGATAA GCAGTTGGCTCATGACGCTGTTATTGATTCGGTGGTGTTGAAAGGCACGGCCGTCCAGTACCGTTGA
AA sequence Show only first row Show all	>Lus10005692 pacid=23168899 polypeptide=Lus10005692 locus=Lus10005692.g ID=Lus10005692.BGIv1.0 annot-version=v1.0 MWLSAAGKSIFFSYTRVRQVKLKRFYAGAPALYFGNPNLYEPTQAAGNWLELNCSIVVDHLHELRKEPFLALSYFKQVKGGGFLHDVSTYAAMIKILCFW SLDRKLDSMLDEIAQNRTELGFELVDLLQVLSDDGCDAVSKVLDALVKRLALLEMFDEAQDVLIHVKDFGVIPSIFTVNYLMNRLIDSNRADAAVAIYLQ LETCFGLKPNDYTFGIVVKALCKKGRLEEAETLLGAMVENGMTPTAFLISTFIEGLCDHHSPLLGYKALQSFIEAKIPVDAYSFTLLIRGFCNVNKLDEA KEVLVEMKRLRFGPDVYAYGPVIHRLCKIGKLLEALSIHDEMLSNGVKTNCEVVSSILQGLSNAGMVSKVSNLFKTCKDNGMYLDKVCYNIVMKSFCTLG DVESATGLLTEMKEKRMVPDLVNYTTLIDGYCHEGKLHEATKFFEEMKDNGIEPDIIVYNVLVSGFSRFGHTARIERLLAYMTDHGIEPTNDTYGIIIDG LCNAGKLEDAEAFFSERIKEKDRGLDLCNAMVNGYCCMKSVEKAFRLFVSVSQQGYILKKSTCLKLISSLEYDMAKYVQLAETMLNLEADYSCMLCSRII GKLSRAGEMEKARYVLHLLDRREMSSDLVAYTMMIQGYCRVNQPEEGFKVLDEMKKRGIEPDIVTFTVLLDGALKNSDGSRRKQEVVTKVRDEMERTNVE PDAVHYTVLINRSGRANNLQEAKELFKQMIDRGVEPDTVAYTALLCGYYRAGDMEGAGVVLDEISDKQLAHDAVIDSVVLKGTAVQYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10005692 [exp]	0	1
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	5.7	0.8154
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10008967 [exp]	5.8	0.7990
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	6.7	0.7674
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10033033 [exp]	7.3	0.7551
AT1G73400			Pentatricopeptide repeat (PPR)...		Lus10019141 [exp]	10.2	0.7643
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10037738 [exp]	12.7	0.6894
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	14.7	0.7735
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	14.7	0.7821
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027543 [exp]	14.8	0.7348
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10042215 [exp]	17.0	0.7397

Compare expression of checked genes

Lus10005692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.