Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03560 495 / 1e-171 unknown protein AT5G23490 191 / 6e-53 unknown protein AT5G23510 176 / 2e-51 unknown protein AT5G08440 172 / 4e-46 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020297 [exp] 996 / 0 AT3G03560 489 / 3e-164 unknown protein Lus10004286 [exp] 196 / 2e-54 AT5G23490 622 / 0.0 unknown protein Lus10019229 [exp] 197 / 4e-54 AT5G23490 667 / 0.0 unknown protein Lus10020293 [exp] 110 / 3e-25 AT5G35910 691 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10029154 [exp] 79 / 2e-17 AT5G23510 95 / 6e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073400 [exp] 572 / 0 AT3G03560 568 / 0.0 unknown protein Potri.004G133700 [exp] 192 / 2e-53 AT5G23490 627 / 0.0 unknown protein Potri.001G357700 [exp] 44 / 0.0004 AT2G34680 2236 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005694 pacid=23168890 polypeptide=Lus10005694 locus=Lus10005694.g ID=Lus10005694.BGIv1.0 annot-version=v1.0 ATGTCGCAGCTGGGACTTACGGATGAGAGGGTTCAGCCGCAGAGTTCCAACTCTATGCAGAATCAGAGGAGTGATTTTGGAACACAGCCTACTCATAGGG ACGCAACTGGTGATGAAAGACTAAGTTTTGCTGAGGATGAAGAGGCAATGGCTCTTTACTCGAGAGTGATGAACCAAAAAGAGGAGATTCAGATGCTACG TAAACAGATTGCTACTGCTGGCGTCAAGGAACTCCAATTACTGAGCGAGAAATATGCACTGGAGAGGAAATTCTCTGAGTTGAGAAGGGCAATTGACGAT AAGCAAAATGAAGCTGTTACAGCTGCTTTAAATGAATTAGTTCGTAGAAAAGGTGATCTTGAAGAGAATTTCAAGTTGGCTCACAACTTGAAGGTGGTAG ATGATGAGAGGTATATTTTTGTGTCTTCTATTCTTGGCTTGTTGGCTGAACATGAAATTTGGCCCCATGCTCTGAATGCCTCTTCATTATCCAATAGTGT GAAGGAGAGAATAAGAGGGTTGGGATCTACTATGGGATCACAAACTGAGAGTGGCAATCATGACAGAGACAATCTTGGGCCTGGCATTCTGACTGGTCAA TTTCATGATCCAGCCATGGGCCGTAATACGAATCCTCATAATACACTTGAGCCAAGAGATAATATGCTGGGACATATGCCTCAGAAGAATATCGCAGAAA GAGCAAGTTCTATGCTTGACAATGACCGGCAACCACAGCCTCGTAGCAACAATTCTCCGGAGTTTGAATTTAATCGTGATAGCCATGGAAGTAGTTTCGG TGCAGCAAGTAGTTCACTCTCTCTCAGTTTCAATAAAGGTCTCGGCGACATGAGAGGGCAAGAGATGGTGACTAAAGACTTGCTTCTTCCTTCAAATGGA GATCATGAAATGACTTCCTCTGTTTCCGATGATGGCCCTGGCATAGATGGGTTTCAGATTGTTGGAGATGCTGCCCCTGGAGAAAGGCTCCTTGGTTGTG GATACCCGGTTCGAGGAACCTCTCTTTGCATGTTTCAGTGGGTCCGCCATCTCGATGATGGCACCAGGCAGTACATTGATGGTGCCACAAATCCAGAATA TATTGTTACTGCTGATGATGTTGATAAGGTCATTGCCGTTGAGTGCATACCAATGGATGATCAAGGACGTCAAGGAGAACTAGTGAGACTATTTGCAAAT GGCCAACGGAAAATAAAGTGTGACCCAGATATGCAATCAGAAATCGACTCGTATATCACCCATGGGGAAGCTACGTTTAGCGTCTTATTGCTGATGGACA CTTCTGAGAATTGGGAGCCAATTGATCTAGTCTTGCAACGATCTGGCTATCGTATGAAGAGCAAAATCTCAGTCGAACTAGTTCTCGCTGAAAAATTCTC CAAGGATCTTTCAATAAAAATCCCTTCTGGTTCGACACAATTTGTTCTGACGAGCTCCGATGGAACATCTTATCCTCTCAGTACATCAACTGTTCGGATG CGAGAAACTCTTGTGTTGACAATGAGAATGTTCCAGAGTAAGGTAAACATATCTCCTGTGTCTCCTTAA
AA sequence Show only first row Show all	>Lus10005694 pacid=23168890 polypeptide=Lus10005694 locus=Lus10005694.g ID=Lus10005694.BGIv1.0 annot-version=v1.0 MSQLGLTDERVQPQSSNSMQNQRSDFGTQPTHRDATGDERLSFAEDEEAMALYSRVMNQKEEIQMLRKQIATAGVKELQLLSEKYALERKFSELRRAIDD KQNEAVTAALNELVRRKGDLEENFKLAHNLKVVDDERYIFVSSILGLLAEHEIWPHALNASSLSNSVKERIRGLGSTMGSQTESGNHDRDNLGPGILTGQ FHDPAMGRNTNPHNTLEPRDNMLGHMPQKNIAERASSMLDNDRQPQPRSNNSPEFEFNRDSHGSSFGAASSSLSLSFNKGLGDMRGQEMVTKDLLLPSNG DHEMTSSVSDDGPGIDGFQIVGDAAPGERLLGCGYPVRGTSLCMFQWVRHLDDGTRQYIDGATNPEYIVTADDVDKVIAVECIPMDDQGRQGELVRLFAN GQRKIKCDPDMQSEIDSYITHGEATFSVLLLMDTSENWEPIDLVLQRSGYRMKSKISVELVLAEKFSKDLSIKIPSGSTQFVLTSSDGTSYPLSTSTVRM RETLVLTMRMFQSKVNISPVSP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03560			unknown protein		Lus10005694 [exp]	0	1
AT3G03560			unknown protein		Lus10020297 [exp]	1.4	0.8958
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10019962 [exp]	6.5	0.8775
AT3G12100			Cation efflux family protein (...		Lus10004168 [exp]	6.5	0.8855
AT3G29270			RING/U-box superfamily protein...		Lus10003473 [exp]	7.5	0.8465
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10021888 [exp]	13.0	0.8603
AT4G39370		UBP27	ubiquitin-specific protease 27...		Lus10020843 [exp]	13.4	0.8414
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10025604 [exp]	13.4	0.8376
AT2G04305			Magnesium transporter CorA-lik...		Lus10007098 [exp]	14.1	0.8647
AT2G04305			Magnesium transporter CorA-lik...		Lus10020472 [exp]	14.5	0.8399
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10019119 [exp]	23.2	0.8478

Compare expression of checked genes

Lus10005694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.