Plant FIBer expression Database

Lus10005697 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G18170 780 / 0 GDH1 glutamate dehydrogenase 1 (.1)
AT3G03910 769 / 0 GDH3 glutamate dehydrogenase 3 (.1)
AT5G07440 711 / 0 GDH2 glutamate dehydrogenase 2 (.1.2.3)
AT1G51720 127 / 1e-31 Amino acid dehydrogenase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020288
[exp]
842 / 0 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1)
Lus10003858
[exp]
814 / 0 AT5G18170 782 / 0.0 glutamate dehydrogenase 1 (.1)
Lus10032509
[exp]
709 / 0 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3)
Lus10043007
[exp]
591 / 0 AT5G07440 649 / 0.0 glutamate dehydrogenase 2 (.1.2.3)
Lus10006872
[exp]
124 / 8e-31 AT1G51720 1019 / 0.0 Amino acid dehydrogenase family protein (.1)
Lus10037612
[exp]
101 / 8e-23 AT1G51720 947 / 0.0 Amino acid dehydrogenase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G058300
[exp]
798 / 0 AT5G18170 787 / 0.0 glutamate dehydrogenase 1 (.1)
Potri.019G034800
[exp]
785 / 0 AT5G18170 783 / 0.0 glutamate dehydrogenase 1 (.1)
Potri.015G111000
[exp]
722 / 0 AT5G07440 773 / 0.0 glutamate dehydrogenase 2 (.1.2.3)
Potri.012G113500
[exp]
717 / 0 AT5G07440 766 / 0.0 glutamate dehydrogenase 2 (.1.2.3)
Potri.001G199600
[exp]
129 / 3e-32 AT1G51720 1033 / 0.0 Amino acid dehydrogenase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0603 AA_dh_N PF02812 ELFV_dehydrog_N Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
CL0063 NADP_Rossmann PF00208 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
Representative CDS sequence
>Lus10005697 pacid=23168900 polypeptide=Lus10005697 locus=Lus10005697.g ID=Lus10005697.BGIv1.0 annot-version=v1.0
ATGAATGCATTAGCAGCAACGAACAGGAACTTCAAGCTAGCAGCAAGGCTGCTGGGTCTGGACTCCAAGCTCGAGAAGAGCTTGCTCATCCCTTTCAGAG
AAATCAAGGTTGAGTGTACTATACCAAAGGATGATGGGACTTTGGCATCCTTTGTTGGGTTCAGAGTTCAGCATGACAATGCCAGAGGACCCATGAAGGG
AGGAATCAGATACCACCCAGAGGTTGACCCGGACGAAGTGAATGCACTAGCACAGCTCATGACGTGGAAGACTGCAGTGGCCAACATCCCATATGGAGGT
GCCAAAGGTGGGATTGGATGCTCACCAGGCGACTTGAGCATCTCAGAGCTTGAGAGGCTTACTAGGGTTTTCACACAGAAGATCCATGACCTCATTGGAA
TCCACATTGATGTTCCTGCTCCTGATATGGGTACTGGCCCTCAGACTATGGCTTGGATTCTAGATGAGTACTCCAAGTTTCATGGCCACTCACCTGCTGT
TGTTACAGGAAAGCCTATTGATCTCGGTGGCTCGCTTGGTCGAGATGCTGCGACGGGGAGAGGAGTGCTGTTTGCAACAGAAGCATTGCTTAACGAGCAC
GGAAAGTCTATCTCGGGGCAACGATTCGTCATACAGGGATTTGGCAATGTGGGTTCGTGGGCTGCACAGCTGATTCATGAGCAAGGTGGTAAAGTTGTTG
CTGTAAGTGACATCACTGGTGCTATAAAGAACAGCAAAGGACTTGACATCCCAAGTCTCTTGAAACATTGGAAGGAGAACAAAGGTGTTAAAGGGTTCCA
TGGAGCAGATTCGATCCATCCGGATTCGATACTAGTCGAGGACTGCGACATCCTCATTCCGGCTGCTCTTGGTGGTGTCATCAACAGGGAGAATGCGAAT
GATATCAAAGCCAAGTTCATTGTCGAAGCTGCGAATCATCCTACTGATCCGGAGGCTGACGAGATTTTGTCAAAGAAAGGTGTTGTTATACTTCCAGACA
TTTACGCAAACTCTGGCGGAGTCACAGTTAGCTACTTTGAGTGGGTGCAGAACATTCAAGGATTCATGTGGGAGGAAGAGAAGGTGAATGATGTCCTGAA
GACTTACATGACCAAAGGGTTCAAGGATGTGAAGGAGATGTGCAAAACCCACGACTGCGACCTCAGGATGGGCGCATTCACGCTTGGAGTCAACCGTGTC
GCTCGAGCCACTGTTCTTAGAGGTTGGGAAGCGTAA
AA sequence
>Lus10005697 pacid=23168900 polypeptide=Lus10005697 locus=Lus10005697.g ID=Lus10005697.BGIv1.0 annot-version=v1.0
MNALAATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGG
AKGGIGCSPGDLSISELERLTRVFTQKIHDLIGIHIDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEH
GKSISGQRFVIQGFGNVGSWAAQLIHEQGGKVVAVSDITGAIKNSKGLDIPSLLKHWKENKGVKGFHGADSIHPDSILVEDCDILIPAALGGVINRENAN
DIKAKFIVEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNDVLKTYMTKGFKDVKEMCKTHDCDLRMGAFTLGVNRV
ARATVLRGWEA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G18170 GDH1 glutamate dehydrogenase 1 (.1) Lus10005697
[exp]
0 1
AT2G23790 Protein of unknown function (D... Lus10022496
[exp]
1.4 0.9709
AT4G16850 unknown protein Lus10015507
[exp]
2.4 0.9576
AT4G37870 PCK1, PEPCK phosphoenolpyruvate carboxykin... Lus10028227
[exp]
2.6 0.9737
AT5G38760 Late embryogenesis abundant pr... Lus10003046
[exp]
3.2 0.9548
AT4G30420 nodulin MtN21 /EamA-like trans... Lus10019970
[exp]
5.0 0.9591
AT3G14260 Protein of unknown function (D... Lus10001484
[exp]
5.2 0.9644
AT1G08630 THA1 threonine aldolase 1 (.1.2.3.4... Lus10014658
[exp]
8.0 0.9629
AT5G08240 unknown protein Lus10040984
[exp]
9.2 0.9343
AT4G36670 AtPMT6, AtPLT6 polyol/monosaccharide transpor... Lus10041731
[exp]
12.3 0.9366
AT3G54110 ATUCP1, UCP1, U... ARABIDOPSIS THALIANA UNCOUPLIN... Lus10035538
[exp]
14.1 0.9377

Lus10005697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.