Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34750 357 / 2e-115 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) AT1G30590 335 / 9e-107 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) AT2G39240 312 / 1e-98 RNA polymerase I specific transcription initiation factor RRN3 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005693 [exp] 1080 / 0 AT2G34750 358 / 2e-116 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) Lus10026162 [exp] 707 / 0 AT2G34750 540 / 0.0 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) Lus10018154 [exp] 91 / 8e-20 AT1G30590 98 / 1e-22 RNA polymerase I specific transcription initiation factor RRN3 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G098500 [exp] 442 / 4e-148 AT2G34750 524 / 5e-180 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) Potri.007G065101 [exp] 78 / 2e-16 AT2G34750 59 / 4e-10 RNA polymerase I specific transcription initiation factor RRN3 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05327 [flax] [poplar] RRN3 RNA polymerase I specific transcription initiation factor RRN3
Representative CDS sequence Show only first row Show all	>Lus10005701 pacid=23168906 polypeptide=Lus10005701 locus=Lus10005701.g ID=Lus10005701.BGIv1.0 annot-version=v1.0 ATGGGTGTTGAACTAGTTCCCAGCGATATAGTCGAAGATTTTAGCGCCACCAACTCCGATATGGTTTACCAGTTCAGGCTTGCCCTCAGGTCCAAGTCTG CCTCTTCGGATGATACCAAATATTACAATGAGATTGTGGAATATCTGGGGCTCCGTCACTATACTATTGAGCAGGCGCCCTACCTGATAACCACTATACA TGTGCTATCTTGGGTAGTTGCCGATCTTGACTATCAATGTCATGACCAGCTTCTGGATAGAATTTTCAATATGCCGTTGTGCAACTTATGGCCCAATGCG AGGAAAGCATTGCTTGAACTGATTAAATCCATGGCTGCTTCTAATGGAAACTTGCTGGATTCATGCTTGAAAATGCTTATACAAAATTTCACACCTCCAA TAGACAAGCGAACAGAACGACTTGGTCTGGAGAGAAAGGGAAGTGTTCTTCCCGAGATCCATGCAACTCTGGAGGCTCTCTTTCAGTTGGTTCCCATGGC AGCAGATAGGATATCGCTGATTCTCTTGGAAAACATGCCTTGGAATCCTAAGACAAAGTATGACCAATTACTTATGAAGCGTCAACTTATCTTCGTCGAG AACATGCTCAAGCTGGCGCGTGGTCCAAGTAGGGAGTTTGTTGAGGAAAGAATCCTCAAGAATTTGATGATCATGTTAAGAGACGTAGATGTATTAATTG GTTGCGATAATAATTTACATGAAGACTCTTCCAAGGGCATATTTTCGATGGAGCTAGACGACGAGCTTGCAAGCACTTTAAGTGAGAAGAATTATTCGGA CAGTGATATGGCTGAAATGCTTGATAGTTTAATGGTTCAAACCTTTGAGCACCTGGATTCTGCTGCTCATAACAAACATTTGCATAAGGTCTTTGATATG TTATTAATTACGTTCGAGGAGGTGGTATTGACTACAGAGAAGACTAAGTTTGCCCAGTTTGTAATGTTCTATGCCTGTGCCCTGGATCCTGAACACTGTG GGCGGAAATTTGCAGATTGGCTTATGGATATGTTTGAAAACAATTCTAACCCTCTTAAAAAGATGAGTGCAGTGGCATACCTGGCTAGCTTCCTAGCTCG CGCAAAGTTTCTTGATTCTGATTTTATTCGTCTGGAATCTGTTGCTAACTATCTTGAAAGCCTTGTGGGTTGGTGTTGCCAATATTGCGCAAAACATGAC AGCGACATGAACCCTACACTCGATAAACATGAAGTCTTCTACTCTGGATGCCAGGCAATTATGCACGTGCTGTGCTTTCATATGCGATCAATCATGGGCT GTCATGAGCTCAGATCTAAGCTAGTCAGCATGCCTCTGGAAAGTATCTTGAAACATAGACTCGATCCGCTTACGGTTTGTTCGCGACCAATTGTCGAAGA GTTCCTTAAACAGGCAAAAGCTGCTGGCCTTTTTGTTTTCGAAGGCTTGTTGGGGCCGAAGGTATTGAGAAGCTTTGGTGGCTTCCCATTCGACCCGTGC ATGCTGAACAATTCCGACAGTAACTTCATAAAGTATCACTACGCGTACTGGAAGTACGTCAAAACTACTTATGACGACGAAGACAATTACCCTATCGAGG ATGACGATGAAGAAGGTGGCAGAGATGATGAAGAGGCGGTCGCTGATGATTATGAGGTCGCGTACATGGAAGAAGGGATCTCGAGGAGCTTTGATATGGC CGAAAATGCCTTTAGCAAGATGTCCTTCACCCCTGGGAATAGCAGCAGCTTAGAGCAGAGGTTTGAAGCCCAAGGATTGCAAAGAATGCCTTCGAGAATA AGACCCCATGAGTCCAGAATCATTGTAAACGACGGTCAAAGCTCTGCTCGTGGCCTGCTGTTTTAA
AA sequence Show only first row Show all	>Lus10005701 pacid=23168906 polypeptide=Lus10005701 locus=Lus10005701.g ID=Lus10005701.BGIv1.0 annot-version=v1.0 MGVELVPSDIVEDFSATNSDMVYQFRLALRSKSASSDDTKYYNEIVEYLGLRHYTIEQAPYLITTIHVLSWVVADLDYQCHDQLLDRIFNMPLCNLWPNA RKALLELIKSMAASNGNLLDSCLKMLIQNFTPPIDKRTERLGLERKGSVLPEIHATLEALFQLVPMAADRISLILLENMPWNPKTKYDQLLMKRQLIFVE NMLKLARGPSREFVEERILKNLMIMLRDVDVLIGCDNNLHEDSSKGIFSMELDDELASTLSEKNYSDSDMAEMLDSLMVQTFEHLDSAAHNKHLHKVFDM LLITFEEVVLTTEKTKFAQFVMFYACALDPEHCGRKFADWLMDMFENNSNPLKKMSAVAYLASFLARAKFLDSDFIRLESVANYLESLVGWCCQYCAKHD SDMNPTLDKHEVFYSGCQAIMHVLCFHMRSIMGCHELRSKLVSMPLESILKHRLDPLTVCSRPIVEEFLKQAKAAGLFVFEGLLGPKVLRSFGGFPFDPC MLNNSDSNFIKYHYAYWKYVKTTYDDEDNYPIEDDDEEGGRDDEEAVADDYEVAYMEEGISRSFDMAENAFSKMSFTPGNSSSLEQRFEAQGLQRMPSRI RPHESRIIVNDGQSSARGLLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34750			RNA polymerase I specific tran...		Lus10005701 [exp]	0	1
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10034154 [exp]	5.8	0.7941
AT4G34140			D111/G-patch domain-containing...		Lus10039947 [exp]	7.4	0.8457
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10009179 [exp]	9.6	0.8381
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10000665 [exp]	17.3	0.7363
AT5G55060			unknown protein		Lus10021546 [exp]	20.6	0.8365
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10043105 [exp]	22.6	0.8074
AT5G07610			F-box family protein (.1)		Lus10041733 [exp]	31.9	0.8214
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	33.4	0.8112
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10032724 [exp]	37.2	0.8106
					Lus10040920 [exp]	43.7	0.8070

Compare expression of checked genes

Lus10005701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.