Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18130 134 / 4e-38 unknown protein AT3G03870 121 / 4e-33 unknown protein AT4G10080 53 / 5e-08 unknown protein AT4G13530 48 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020284 [exp] 413 / 6e-148 AT5G18130 162 / 9e-49 unknown protein Lus10041074 [exp] 54 / 4e-08 AT4G13530 170 / 2e-50 unknown protein Lus10003531 [exp] 53 / 6e-08 AT4G13530 186 / 7e-55 unknown protein Lus10030342 [exp] 52 / 1e-07 AT4G13530 176 / 1e-53 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G035600 [exp] 168 / 6e-51 AT5G18130 159 / 8e-47 unknown protein Potri.013G057200 [exp] 137 / 6e-39 AT5G18130 138 / 7e-39 unknown protein Potri.019G071300 [exp] 50 / 4e-07 AT4G10080 125 / 3e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005702 pacid=23168891 polypeptide=Lus10005702 locus=Lus10005702.g ID=Lus10005702.BGIv1.0 annot-version=v1.0 ATGGATCTGGAAGAGTGGGAAGTCCTCCCTCGCGACGCGACCTTCTTCGACTTCCATGGCGGCGATGGCGGCAGCAAGCAGAAGATGATGCTTCCACTTC CACTCTCCCCTCGCGCAAAAGGTTCTTCTACTACTATCTCGAGTCTCGTCAATACTGATGATTTCGTCGATATGAATTACTTCTCCATCTCCCGCGTCGT TGTGCCTCGGAGCCATCTGATCCCTTTTGAATTGGAATCACCAGAACCCGCACCCGGCCCGGATCCGGAACCGGAATCCGCATCGCAAGTTTTCTTCAAG AAGATGAAGGAAACTGAATTCGTCGACATGAAAATGGACTCGCCCAAGTCGCAGACTTCGTCATCGCCAGTTTGGGAGTCTCCTAGGTTGGAATCTTCTG GGAAGTTCAGCTTTGACGATGATGATGGTGATGAATTGAGCAGCTGTTCATCCCCCAGGATGGTCAAAGTCAATGATGATGAGACTAACGGTGCGTTGAA TCTGTGGAAATGGAGCTTGCATGGGATTGGAGCCATCTGCTCGTTTGGTTTTGCTGCTGCTACTGTCTGCATCATCATATTTGGTAGGAACAAGCAGCTT CAGAATCAGCAGCTCAGGTTCCAGATTTACACTGATGACAAGAGGGTGAAGCAGGTGGTGCAGCATGCGACTAGGCTCAACGATGCGATTTCGGCGGTGA GAGGGGTTCCGATCGCTAGGGCTCAAGTCACATTTGGTGGCTACTATGATGCCATTTGA
AA sequence Show only first row Show all	>Lus10005702 pacid=23168891 polypeptide=Lus10005702 locus=Lus10005702.g ID=Lus10005702.BGIv1.0 annot-version=v1.0 MDLEEWEVLPRDATFFDFHGGDGGSKQKMMLPLPLSPRAKGSSTTISSLVNTDDFVDMNYFSISRVVVPRSHLIPFELESPEPAPGPDPEPESASQVFFK KMKETEFVDMKMDSPKSQTSSSPVWESPRLESSGKFSFDDDDGDELSSCSSPRMVKVNDDETNGALNLWKWSLHGIGAICSFGFAAATVCIIIFGRNKQL QNQQLRFQIYTDDKRVKQVVQHATRLNDAISAVRGVPIARAQVTFGGYYDAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18130			unknown protein		Lus10005702 [exp]	0	1
AT5G18130			unknown protein		Lus10020284 [exp]	1.0	0.9046
AT1G15060			Uncharacterised conserved prot...		Lus10034107 [exp]	2.2	0.8155
AT2G47890	CO	COL13	B-box type zinc finger protein...		Lus10005936 [exp]	2.4	0.8632
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10019625 [exp]	4.0	0.8200
AT3G57120			Protein kinase superfamily pro...		Lus10038716 [exp]	5.3	0.8032
AT1G15060			Uncharacterised conserved prot...		Lus10000099 [exp]	5.8	0.7974
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Lus10021769 [exp]	6.0	0.8088
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039925 [exp]	7.7	0.8240
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10039574 [exp]	8.5	0.7967
AT3G26000			Ribonuclease inhibitor (.1)		Lus10006438 [exp]	9.5	0.8150

Compare expression of checked genes

Lus10005702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.