Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03860 278 / 3e-93 ATAPRL5 APR-like 5 (.1) AT5G18120 273 / 2e-91 ATAPRL7 APR-like 7 (.1) AT1G34780 127 / 1e-34 ATAPRL4 APR-like 4 (.1.2) AT4G08930 118 / 4e-31 ATAPRL6 APR-like 6 (.1) AT1G04980 58 / 3e-09 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 53 / 1e-07 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT2G47470 51 / 2e-07 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G52260 49 / 3e-06 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT1G35620 45 / 3e-05 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT1G77510 43 / 0.0002 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020283 [exp] 484 / 1e-174 AT3G03860 296 / 3e-100 APR-like 5 (.1) Lus10036486 [exp] 127 / 3e-34 AT1G34780 272 / 2e-90 APR-like 4 (.1.2) Lus10010354 [exp] 121 / 3e-32 AT1G34780 268 / 2e-89 APR-like 4 (.1.2) Lus10020928 [exp] 121 / 5e-32 AT1G34780 259 / 2e-85 APR-like 4 (.1.2) Lus10033449 [exp] 116 / 4e-30 AT1G34780 260 / 8e-86 APR-like 4 (.1.2) Lus10031522 [exp] 49 / 2e-06 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10015160 [exp] 49 / 4e-06 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10018156 [exp] 47 / 1e-05 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10036337 [exp] 46 / 2e-05 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G057100 [exp] 348 / 1e-120 AT5G18120 293 / 3e-99 APR-like 7 (.1) Potri.019G035700 [exp] 320 / 1e-109 AT5G18120 277 / 4e-93 APR-like 7 (.1) Potri.002G097601 [exp] 132 / 5e-36 AT1G34780 357 / 9e-124 APR-like 4 (.1.2) Potri.005G164200 [exp] 122 / 3e-32 AT1G34780 364 / 1e-126 APR-like 4 (.1.2) Potri.014G160000 [exp] 56 / 8e-09 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.002G082100 [exp] 52 / 2e-07 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.008G040100 [exp] 52 / 3e-07 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.002G198300 [exp] 47 / 7e-06 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G122800 [exp] 47 / 1e-05 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.005G179000 [exp] 46 / 2e-05 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10005703 pacid=23168905 polypeptide=Lus10005703 locus=Lus10005703.g ID=Lus10005703.BGIv1.0 annot-version=v1.0 ATGTTTCCGGCGGTGTCGGCTTTTGTGTTCCTCTTCACCATCCGATTCGTTTCTTCGTCGGGGACGACGACGGTGCCGGGTTCGAATACCTGCCCCAGTG ATTTGGTTCTGTTCGTCTACAATCTCCAATCTCAATGCCATCCTTCGATCTCCTCCAATCCTCCTCTCCAGGTGGATGGGAACTTCGTTGAGAGAGCACT GACGTCACCTCGGGGAAATGCTTATACTTCGTTATTCTTCTATGCTTCATGGTGCCCCTTTTCACGCAGCATGAGACCTAAGTTCGAATCTCTTGCTGCC ATGTTTCCTCAGATTGAGCATTTGGCTGTTGAACAATCTTCAGCTTTCCCAAGGGTATTTTCCAGATATGGAATCCATAGCTTTCCATCCATATTGATGG TCAACCAGACAATGAAAGTGCGATATAGAGGGCCTAAAGATCTTCAGTCGCTCGTGCAATTTTATGTCAAAACAACAGGACTTGAGCCAGTGCAATATCT CTCTGAGCCTGAGGAAACTAATTTGCAGACTCGCAGAAACAGCATCCTGCAGCCTTGGGACGGGTCACCACTGGAGCAAGTATTGAGAAGGGAACCATAC TTAGCATTATCGATCATATTCCTCTGCTTCCGGGTGATACTATTTCTTTCTCCTAAACTCTTACTTCGCCTCAAGTCCTTCTGTTCCTCCAACATCCCTC ATCTGAACTTGGGAATGTTCGGTGAGACAAGCCAACTGTTTGAGCGTATCCTCCACCTGGTAGATGTGAGGCGTATCTGGACCAAGCTTAGACTATGCAA GACTAGGAATTTCCACGAGGGGGCGAAAAACTGCCGTGCCTGGGCTTCTTCCTTTGCGTCAGTTTCACTCGGTGAATCTTCATCATCATCAGCTAGGTTG TGA
AA sequence Show only first row Show all	>Lus10005703 pacid=23168905 polypeptide=Lus10005703 locus=Lus10005703.g ID=Lus10005703.BGIv1.0 annot-version=v1.0 MFPAVSAFVFLFTIRFVSSSGTTTVPGSNTCPSDLVLFVYNLQSQCHPSISSNPPLQVDGNFVERALTSPRGNAYTSLFFYASWCPFSRSMRPKFESLAA MFPQIEHLAVEQSSAFPRVFSRYGIHSFPSILMVNQTMKVRYRGPKDLQSLVQFYVKTTGLEPVQYLSEPEETNLQTRRNSILQPWDGSPLEQVLRREPY LALSIIFLCFRVILFLSPKLLLRLKSFCSSNIPHLNLGMFGETSQLFERILHLVDVRRIWTKLRLCKTRNFHEGAKNCRAWASSFASVSLGESSSSSARL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10005703 [exp]	0	1
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	1.0	0.9202
AT3G51580			unknown protein		Lus10025140 [exp]	2.2	0.8705
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	2.8	0.8950
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	3.0	0.8579
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	3.5	0.8816
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10022155 [exp]	4.9	0.8721
AT1G80400			RING/U-box superfamily protein...		Lus10011475 [exp]	7.7	0.8388
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	10.2	0.8402
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10013020 [exp]	10.5	0.8275
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10037759 [exp]	10.5	0.8508

Compare expression of checked genes

Lus10005703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.