Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18110 345 / 6e-122 NCBP novel cap-binding protein (.1) AT4G18040 118 / 1e-32 LSP1, CUM1, AT.EIF4E1, EIF4E eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) AT1G29550 102 / 3e-26 Eukaryotic initiation factor 4E protein (.1) AT5G35620 99 / 2e-25 eIFiso4E, EIF(ISO)4E, EIF(ISO)4E, EIF4E2, EIF(ISO)4E, LSP1, LSP, EIF(ISO)4E, EIF(ISO)4E, EIF(ISO)4E LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) AT1G29590 100 / 3e-25 eIF4E3 eukaryotic translation Initiation Factor 4E3, Eukaryotic initiation factor 4E protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020282 [exp] 461 / 1e-167 AT5G18110 347 / 1e-122 novel cap-binding protein (.1) Lus10002785 [exp] 117 / 4e-32 AT4G18040 313 / 7e-109 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10011988 [exp] 116 / 5e-32 AT4G18040 315 / 4e-110 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10011776 [exp] 113 / 8e-31 AT5G35620 263 / 4e-90 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Lus10023733 [exp] 110 / 6e-30 AT5G35620 261 / 2e-89 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Lus10005410 [exp] 108 / 1e-28 AT4G18040 318 / 3e-111 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10015247 [exp] 106 / 4e-28 AT4G18040 322 / 1e-112 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10015251 [exp] 81 / 2e-18 AT4G18040 241 / 3e-81 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G057000 [exp] 406 / 6e-146 AT5G18110 358 / 6e-127 novel cap-binding protein (.1) Potri.011G077200 [exp] 122 / 2e-34 AT4G18040 299 / 1e-103 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Potri.008G171100 [exp] 113 / 5e-31 AT5G35620 249 / 5e-85 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Potri.010G066700 [exp] 107 / 7e-29 AT5G35620 254 / 1e-86 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0625 [flax] [poplar] eIF4e PF01652 [flax] [poplar] IF4E Eukaryotic initiation factor 4E
Representative CDS sequence Show only first row Show all	>Lus10005704 pacid=23168886 polypeptide=Lus10005704 locus=Lus10005704.g ID=Lus10005704.BGIv1.0 annot-version=v1.0 ATGGAAGTGGTGGAGAAGAAGGAGATCGATAGCCACAACAACAACGCTCAAGCTAACTTAGTCGGTGGCGGTGCCGATTCTGCTTCCTCCGACGTGTTTG AGAAAGAGGCTGAAGAGCGGCAAGCGCGCGAACTCAAAGCCGGGTTGCATCCGCTCAAGAACAAGTTTGTATTTTGGTACACCCGCCGGACGCCAGGAGT CAGAACGCAGACATCGTACGAGGACAATATTAAGAAAATTGTGGAGTTTAGTACGGTTGAAACCTTTTGGGTCTGCTATTGCCACCTAGCTCGCCCGTCT TCTCTGCCTAGTCCGACAGATCTCCATCTTTTCAAGGCTGGAATTCGCCCTCTATGGGAGGACAGTGCTAATTCCAGCGGTGGCAAATGGATAATACGAT TCAAGAAGGTTGTCTCAGGCCGCTTCTGGGAGGATCTGGTGCTTGCCTTGGTGGGTGACCAACTCGAGTACAGCGAGAACATCTGCGGTGCAGTACTAAG CATTCGATTCAACGAAGATATACTAAGTGTATGGAATCGCAATGCTTCTGATCATCAGGCTGTGATGGCATTGAGGGACTCGATCAAGAGGCACTTGAAG CTCCCTCACAGCTACGTGATGGAGTACAAGCCCCACGACGCTTCCCTTCGCGACAACTCATCGTACCGAAACACATGGATGAGAGGATAG
AA sequence Show only first row Show all	>Lus10005704 pacid=23168886 polypeptide=Lus10005704 locus=Lus10005704.g ID=Lus10005704.BGIv1.0 annot-version=v1.0 MEVVEKKEIDSHNNNAQANLVGGGADSASSDVFEKEAEERQARELKAGLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVEFSTVETFWVCYCHLARPS SLPSPTDLHLFKAGIRPLWEDSANSSGGKWIIRFKKVVSGRFWEDLVLALVGDQLEYSENICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLK LPHSYVMEYKPHDASLRDNSSYRNTWMRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18110		NCBP	novel cap-binding protein (.1)		Lus10005704 [exp]	0	1
AT4G34840		ATMTN2, ATMTAN2	ARABIDOPSIS METHYLTHIOADENOSIN...		Lus10042387 [exp]	1.4	0.9148
AT3G08910			DNAJ heat shock family protein...		Lus10005033 [exp]	2.0	0.9078
AT2G19790			SNARE-like superfamily protein...		Lus10012924 [exp]	4.0	0.9005
AT1G17070			GC-rich sequence DNA-binding f...		Lus10000930 [exp]	4.9	0.8984
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10007273 [exp]	7.5	0.8894
AT3G05545			RING/U-box superfamily protein...		Lus10020655 [exp]	7.7	0.8986
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	10.9	0.8698
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10032352 [exp]	11.1	0.8597
AT5G14530			Transducin/WD40 repeat-like su...		Lus10014558 [exp]	11.2	0.8877
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10039437 [exp]	15.0	0.8712

Compare expression of checked genes

Lus10005704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.