Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19780 803 / 0 TUA5 tubulin alpha-5 (.1) AT5G19770 803 / 0 TUA3 tubulin alpha-3 (.1) AT1G64740 786 / 0 TUA1 alpha-1 tubulin (.1) AT1G50010 776 / 0 TUA2 tubulin alpha-2 chain (.1) AT1G04820 776 / 0 TOR2, TUA4 TORTIFOLIA 2, tubulin alpha-4 chain (.1) AT4G14960 775 / 0 TUA6 Tubulin/FtsZ family protein (.1.2) AT2G29550 350 / 6e-117 TUB7 tubulin beta-7 chain (.1) AT4G20890 349 / 9e-117 TUB9 tubulin beta-9 chain (.1) AT1G75780 348 / 3e-116 TUB1 tubulin beta-1 chain (.1) AT1G20010 347 / 1e-115 TUB5 tubulin beta-5 chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020281 [exp] 832 / 0 AT5G19780 850 / 0.0 tubulin alpha-5 (.1) Lus10013765 [exp] 797 / 0 AT5G19770 914 / 0.0 tubulin alpha-3 (.1) Lus10039169 [exp] 797 / 0 AT5G19780 914 / 0.0 tubulin alpha-5 (.1) Lus10035422 [exp] 784 / 0 AT1G50010 910 / 0.0 tubulin alpha-2 chain (.1) Lus10031032 [exp] 784 / 0 AT1G50010 910 / 0.0 tubulin alpha-2 chain (.1) Lus10016448 [exp] 347 / 6e-116 AT5G23860 921 / 0.0 tubulin beta 8 (.1.2) Lus10040712 [exp] 347 / 6e-116 AT5G23860 923 / 0.0 tubulin beta 8 (.1.2) Lus10038458 [exp] 347 / 6e-116 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1) Lus10023348 [exp] 347 / 6e-116 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G036000 [exp] 809 / 0 AT5G19780 813 / 0.0 tubulin alpha-5 (.1) Potri.013G056800 [exp] 809 / 0 AT5G19780 811 / 0.0 tubulin alpha-5 (.1) Potri.003G220300 [exp] 796 / 0 AT5G19780 813 / 0.0 tubulin alpha-5 (.1) Potri.001G004600 [exp] 793 / 0 AT5G19780 809 / 0.0 tubulin alpha-5 (.1) Potri.002G111900 [exp] 783 / 0 AT1G50010 858 / 0.0 tubulin alpha-2 chain (.1) Potri.009G085100 [exp] 778 / 0 AT1G50010 852 / 0.0 tubulin alpha-2 chain (.1) Potri.001G289500 [exp] 776 / 0 AT4G14960 855 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.017G081000 [exp] 775 / 0 AT4G14960 852 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.006G095000 [exp] 352 / 5e-118 AT5G23860 852 / 0.0 tubulin beta 8 (.1.2) Potri.001G464400 [exp] 350 / 3e-117 AT5G62700 850 / 0.0 tubulin beta chain 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0442 [flax] [poplar] Tubulin_C PF03953 [flax] [poplar] Tubulin_C Tubulin C-terminal domain CL0566 [flax] [poplar] Tubulin PF00091 [flax] [poplar] Tubulin Tubulin/FtsZ family, GTPase domain
Representative CDS sequence Show only first row Show all	>Lus10005705 pacid=23168896 polypeptide=Lus10005705 locus=Lus10005705.g ID=Lus10005705.BGIv1.0 annot-version=v1.0 ATGAGAGAGGTCATCAGTCTACACATTGGACAAGCTGGAATTCAGGTCGGGAATTCGTGTTGGGAGCTTTACTGCCTCGAGCATGGCATTCAGCAAGATG GAACCATGCCCAGTGACACGTCGATTGGAAGCGAGCATGATTCCTTCAACACGTTCTTCAGCGAGACTGGCTCAGGAAAGCACGTTCCAAGAGCTATATT CGTCGATCTAGAGCCTACCGTCATTGATGAAGTGAGAACTGGGAGTTATAGACAGCTTTTCCACCCTGAACAGCTCATTTCCGGGAAAGAAGATGCTGCC AACAACTTTGCCAGAGGACATTACACTGTCGGGAGGGAAATCGTCGATCTTTGCCTTGACCGGGTTAGGAAGCTGGCAGATAACTGCACTGGCTTGCAAG GGTTCTTGGTGTTCAATGCTGTTGGTGGTGGCACCGGTTCCGGTTTGGGTTCTCTGTTGTTGGAGCGCTTGTCGGTCGATTATGGAAAGAAGTCCAAGCT CGGGTTCACCATCTTTCCGTCTCCTCAGGTTTCAACTGCTGTCGTTGAACCTTACAACAGTGTACTCTCAACTCATTCCCTCCTCGAGCACACCGACGTA GCTGTGCTTCTCGACAATGAGGCTATCTACGACATCTGCAGGCGATCATTGGACATCGAACGGCCTACCTATTCCAACCTGAACCGCCTGATTTCACAAA TCATCTCATCGTTGACAACTTCCTTGAGGTTTGATGGTGCTATCAATGTTGACATTACAGAGTTCCAGACCAATCTTGTACCGTACCCTCGCATCCATTT CATGCTCTCCTCATACGCCCCTGTAATCTCGGCTGCAAAGGCCTTCCACGAACAGCTCTCAGTTCCTGAGATCACCACTGCGGTGTTTGAGCCCTCGAGT ATGATGGCCAAATGTGACCCCAGGCATGGCAAGTACATGGCTTGCTGTCTCATGTACCGTGGCGATGTTGTCCCGAAGGACGTTAACGCTGCAGTTGCCA CGATCAAGACCAAGAGGACGGTCCAGTTCGTCGACTGGTGCCCTACCGGCTTCAAGTGCGGAATCAATTACCAGCCACCAACCGTCGTCCCAGGAGGCGA TCTTGCCAAGGTGCAGCGGGCAGTCTGCATGATCAGCAACAACACCGCAGTCGCTGAAGTCTTCGGACGAATTGACCACAAGTTCGACCTCATGTACGCC AAGAGAGCCTTCGTGCATTGGTACGTCGGTGAAGGCATGGAGGAAGGGGAGTTCTCGGAAGCTCGTGAGGATCTTGCGGCTCTTGAGAAGGACTACGAGG AGGTTGGCGCGGAAGGCGCTGACGATGATGATGAAGAAGAAGGTGACGAGTACTGA
AA sequence Show only first row Show all	>Lus10005705 pacid=23168896 polypeptide=Lus10005705 locus=Lus10005705.g ID=Lus10005705.BGIv1.0 annot-version=v1.0 MREVISLHIGQAGIQVGNSCWELYCLEHGIQQDGTMPSDTSIGSEHDSFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAA NNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIFPSPQVSTAVVEPYNSVLSTHSLLEHTDV AVLLDNEAIYDICRRSLDIERPTYSNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAFHEQLSVPEITTAVFEPSS MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFGRIDHKFDLMYA KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDDDEEEGDEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10005705 [exp]	0	1
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10020281 [exp]	1.0	0.8843
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Lus10025431 [exp]	5.7	0.8725
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10035694 [exp]	11.1	0.8579
AT1G51640		ATEXO70G2	exocyst subunit exo70 family p...		Lus10035750 [exp]	12.0	0.8576
AT1G09645			unknown protein		Lus10037343 [exp]	16.1	0.8194
AT5G07800			Flavin-binding monooxygenase f...		Lus10003474 [exp]	18.0	0.7867
					Lus10024940 [exp]	19.0	0.8598
AT4G21450			PapD-like superfamily protein ...		Lus10039757 [exp]	20.0	0.8234
AT5G07620			Protein kinase superfamily pro...		Lus10042988 [exp]	22.1	0.7847
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10029520 [exp]	24.4	0.8306

Compare expression of checked genes

Lus10005705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.